Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilX   Type   Machinery gene
Locus tag   OCUAc18_RS17210 Genome accession   NZ_AP024802
Coordinates   3545529..3546347 (-) Length   272 a.a.
NCBI ID   WP_000149374.1    Uniprot ID   N9LAR9
Organism   Acinetobacter baumannii strain OCU Ac18     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3540529..3551347
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OCUAc18_RS17195 (OCUAc18_33700) pilE 3540746..3541171 (-) 426 WP_000788339.1 type IV pilin protein Machinery gene
  OCUAc18_RS17200 (OCUAc18_33710) pilY2 3541168..3541650 (-) 483 WP_001046418.1 type IV pilin protein Machinery gene
  OCUAc18_RS17205 (OCUAc18_33720) pilY1 3541663..3545517 (-) 3855 WP_000768940.1 PilC/PilY family type IV pilus protein Machinery gene
  OCUAc18_RS17210 (OCUAc18_33730) pilX 3545529..3546347 (-) 819 WP_000149374.1 PilX N-terminal domain-containing pilus assembly protein Machinery gene
  OCUAc18_RS17215 (OCUAc18_33740) pilW 3546344..3547345 (-) 1002 WP_000079193.1 PilW family protein Machinery gene
  OCUAc18_RS17220 (OCUAc18_33750) pilV 3547346..3547906 (-) 561 WP_085916952.1 type IV pilus modification protein PilV Machinery gene
  OCUAc18_RS17225 (OCUAc18_33760) fimU 3547900..3548373 (-) 474 WP_001214064.1 GspH/FimT family pseudopilin Machinery gene
  OCUAc18_RS17230 (OCUAc18_33770) ispH 3548543..3549493 (-) 951 WP_000407064.1 4-hydroxy-3-methylbut-2-enyl diphosphate reductase -
  OCUAc18_RS17235 (OCUAc18_33780) gmk 3549616..3550245 (+) 630 WP_000015939.1 guanylate kinase -
  OCUAc18_RS17240 (OCUAc18_33790) rpoZ 3550318..3550596 (+) 279 WP_000135049.1 DNA-directed RNA polymerase subunit omega -
  OCUAc18_RS17245 - 3550635..3550765 (+) 131 Protein_3378 hypothetical protein -

Sequence

Protein


Download         Length: 272 a.a.        Molecular weight: 28832.66 Da        Isoelectric Point: 5.6905

>NTDB_id=88569 OCUAc18_RS17210 WP_000149374.1 3545529..3546347(-) (pilX) [Acinetobacter baumannii strain OCU Ac18]
MTHLNYKNIKGRSKETGATLIVVLIILLIVISVGVLAIRVAIVSLKVATNSQVGQLNFQSSDTPLELIVQMNPTTLTNIT
NVIGAALKAHESNPGAEYNFCYKPTSTSVSFAQTRGASLLRAGSANNAVVEDGGVAGFCDLTSDYGSNRQAVVTQVAVSI
PTDAMADIPGSNLPRDINLSEGTQLPKSMLSTQRIRVITTAFLPAYASTSLETLQSDCLSTSSAKISDNFDSALTDKQTL
ADCLANHNVPFSTQVQEFNYTNKLTEITAPGS

Nucleotide


Download         Length: 819 bp        

>NTDB_id=88569 OCUAc18_RS17210 WP_000149374.1 3545529..3546347(-) (pilX) [Acinetobacter baumannii strain OCU Ac18]
ATGACCCATTTAAATTATAAAAATATCAAAGGTCGATCTAAGGAAACAGGTGCCACACTTATTGTTGTACTTATTATTTT
ATTGATTGTTATTTCTGTCGGGGTTTTGGCAATAAGAGTAGCGATTGTTTCTCTAAAAGTTGCAACTAATAGCCAAGTTG
GCCAATTAAACTTTCAATCTTCAGATACTCCGTTAGAGCTTATTGTACAGATGAACCCAACCACATTGACAAATATTACC
AATGTGATTGGTGCAGCACTGAAAGCACATGAAAGTAACCCTGGTGCGGAATATAACTTTTGCTATAAACCAACCTCTAC
ATCTGTAAGTTTTGCTCAAACTCGGGGAGCAAGTTTGCTTCGGGCTGGCAGCGCCAATAATGCTGTGGTTGAAGACGGTG
GAGTAGCAGGTTTCTGCGATTTAACAAGTGACTATGGGAGTAATCGTCAAGCGGTAGTTACTCAAGTTGCTGTCAGTATC
CCAACCGATGCCATGGCTGATATTCCGGGTTCAAATCTACCTCGGGACATAAATCTTTCCGAAGGAACCCAACTTCCTAA
AAGCATGCTATCTACGCAACGTATCCGGGTTATTACAACAGCGTTTTTACCTGCTTATGCCTCAACTTCTTTAGAAACTC
TGCAATCTGATTGCTTAAGTACGAGTTCCGCAAAAATTAGTGACAACTTTGATAGTGCATTAACGGATAAGCAAACTCTA
GCCGATTGTTTGGCAAACCATAACGTACCTTTTAGTACTCAAGTTCAAGAATTTAACTATACCAATAAGCTGACTGAAAT
CACGGCACCAGGTTCATAA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB N9LAR9

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilX Acinetobacter baumannii D1279779

99.265

100

0.993

Multiple sequence alignment