Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilN   Type   Machinery gene
Locus tag   RQL83_RS01700 Genome accession   NZ_CP135151
Coordinates   357688..358329 (+) Length   213 a.a.
NCBI ID   WP_002116944.1    Uniprot ID   A0A009RUZ9
Organism   Acinetobacter pittii strain AR3676     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 352688..363329
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RQL83_RS01680 (RQL83_01685) - 352694..353026 (+) 333 WP_002116981.1 DUF7709 family protein -
  RQL83_RS01685 (RQL83_01690) rrmA 353029..353853 (+) 825 WP_002117059.1 putative RNA methyltransferase -
  RQL83_RS01690 (RQL83_01695) ponA 353908..356469 (-) 2562 WP_002116655.1 penicillin-binding protein PBP1a -
  RQL83_RS01695 (RQL83_01700) pilM 356630..357688 (+) 1059 WP_031945632.1 pilus assembly protein PilM Machinery gene
  RQL83_RS01700 (RQL83_01705) pilN 357688..358329 (+) 642 WP_002116944.1 PilN domain-containing protein Machinery gene
  RQL83_RS01705 (RQL83_01710) pilO 358326..359078 (+) 753 WP_002116684.1 type 4a pilus biogenesis protein PilO Machinery gene
  RQL83_RS01710 (RQL83_01715) pilP 359089..359616 (+) 528 WP_002116864.1 pilus assembly protein PilP Machinery gene
  RQL83_RS01715 (RQL83_01720) pilQ 359679..361844 (+) 2166 WP_002116833.1 type IV pilus secretin PilQ Machinery gene
  RQL83_RS01720 (RQL83_01725) aroK 361856..362425 (+) 570 WP_002116987.1 shikimate kinase AroK -

Sequence

Protein


Download         Length: 213 a.a.        Molecular weight: 23921.36 Da        Isoelectric Point: 5.4186

>NTDB_id=885671 RQL83_RS01700 WP_002116944.1 357688..358329(+) (pilN) [Acinetobacter pittii strain AR3676]
MATINLLPWRDGLREQRKKQFIILCFGVVVLGITTVFAGWFYLNQKLNDQEQANQLIISTNQNLDQQLKTLNGLQEQRDA
IIERMKLIQGLQSQRPVVVRLVDELVRVTPAAMYLTKFSRTGDKFTIEGKAESPNTVAELLRNLEASPWYRNAFMSSFLA
TEEKKDKAISSLLPRVEDSYGSFVVTVDVGEMGVTTTDDTANTSVGTDKEAAK

Nucleotide


Download         Length: 642 bp        

>NTDB_id=885671 RQL83_RS01700 WP_002116944.1 357688..358329(+) (pilN) [Acinetobacter pittii strain AR3676]
ATGGCAACAATTAATTTACTCCCTTGGCGTGATGGGCTTAGGGAGCAGCGTAAAAAACAATTTATTATTTTATGTTTTGG
GGTCGTTGTTTTGGGGATAACCACTGTATTTGCAGGGTGGTTTTATTTGAATCAAAAATTAAATGATCAAGAACAAGCAA
ATCAGCTCATCATCAGTACAAACCAGAATCTAGATCAACAACTTAAAACCTTAAATGGCTTGCAAGAACAGCGGGATGCA
ATTATTGAGCGTATGAAGCTCATTCAAGGTTTGCAAAGCCAGCGTCCGGTCGTTGTACGTTTGGTGGATGAATTAGTACG
TGTGACCCCGGCAGCCATGTATTTGACTAAATTCAGTCGAACCGGAGATAAATTTACGATTGAAGGTAAAGCGGAAAGTC
CAAATACGGTTGCAGAATTATTACGTAATCTCGAAGCATCGCCATGGTATCGCAACGCTTTTATGAGTTCTTTCTTGGCG
ACCGAAGAGAAAAAAGATAAGGCTATCAGTTCTTTGCTTCCTAGAGTTGAAGATAGCTATGGCAGTTTTGTTGTTACTGT
TGATGTAGGGGAAATGGGTGTGACTACAACAGATGATACCGCCAATACGTCTGTAGGTACGGATAAGGAGGCGGCAAAAT
GA

Domains

Predicted by InterproScan.

Fimbrial assembly protein (PilN) (PilN)

(100-167)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A009RUZ9

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilN Acinetobacter baumannii D1279779

89.202

100

0.892
  comN Acinetobacter baylyi ADP1

71.569

95.775

0.685