Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssbA   Type   Machinery gene
Locus tag   RNZ43_RS20140 Genome accession   NZ_CP135143
Coordinates   4015070..4015588 (-) Length   172 a.a.
NCBI ID   WP_173612866.1    Uniprot ID   -
Organism   Bacillus velezensis strain L33a     
Function   ssDNA binding (predicted from homology)   
DNA processing

Related MGE

Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.

Gene-MGE association summary

MGE type MGE coordinates Gene coordinates Relative position Distance (bp)
Prophage 4015070..4024830 4015070..4015588 within 0


Gene organization within MGE regions


Location: 4015070..4024830
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RNZ43_RS20140 ssbA 4015070..4015588 (-) 519 WP_173612866.1 single-stranded DNA-binding protein SsbA Machinery gene
  RNZ43_RS20145 rpsF 4015628..4015915 (-) 288 WP_004392977.1 30S ribosomal protein S6 -
  RNZ43_RS20150 ychF 4016027..4017127 (-) 1101 WP_004392975.1 redox-regulated ATPase YchF -
  RNZ43_RS20155 - 4017254..4019257 (-) 2004 WP_416405988.1 molybdopterin-dependent oxidoreductase -
  RNZ43_RS20160 - 4019304..4019510 (-) 207 WP_004392973.1 DUF951 domain-containing protein -
  RNZ43_RS20165 - 4019596..4020621 (-) 1026 WP_088005468.1 hypothetical protein -
  RNZ43_RS20170 - 4020789..4021226 (+) 438 WP_416405989.1 GNAT family N-acetyltransferase -
  RNZ43_RS20175 yyaC 4021432..4022046 (+) 615 WP_004392969.1 spore protease YyaC -
  RNZ43_RS20180 - 4022075..4022926 (-) 852 WP_416405990.1 ParB/RepB/Spo0J family partition protein -
  RNZ43_RS20185 soj 4022919..4023680 (-) 762 WP_007409899.1 sporulation initiation inhibitor protein Soj -
  RNZ43_RS20190 noc 4023979..4024830 (-) 852 WP_007409900.1 nucleoid occlusion protein -

Sequence

Protein


Download         Length: 172 a.a.        Molecular weight: 18775.33 Da        Isoelectric Point: 4.7621

>NTDB_id=885628 RNZ43_RS20140 WP_173612866.1 4015070..4015588(-) (ssbA) [Bacillus velezensis strain L33a]
MLNRVVLVGRLTKDPELRYTPSGAAVATFTLAVNRTFTNQSGEREADFINCVTWRRQAENVANFLKKGSLAGVDGRLQTR
NYENQQGQRVFVTEVQAESVQFLEPKNSGGSGSGGYNEGNSGGGQYFGGGQNDNPFSGNQNNQRRNQGNSFNDDPFANDG
KPIDISDDDLPF

Nucleotide


Download         Length: 519 bp        

>NTDB_id=885628 RNZ43_RS20140 WP_173612866.1 4015070..4015588(-) (ssbA) [Bacillus velezensis strain L33a]
ATGCTTAACCGAGTTGTATTAGTCGGAAGACTGACAAAAGACCCAGAGCTTCGTTATACGCCAAGCGGTGCGGCTGTCGC
CACGTTTACTCTTGCTGTGAATCGTACATTCACGAACCAGTCCGGAGAACGTGAAGCCGATTTCATTAATTGTGTCACTT
GGAGAAGACAAGCCGAAAACGTTGCAAACTTTCTTAAAAAAGGAAGCCTTGCCGGCGTAGACGGCCGACTCCAGACAAGA
AATTATGAAAATCAGCAGGGACAGCGTGTCTTCGTGACAGAAGTCCAAGCTGAAAGTGTTCAATTTCTTGAGCCTAAAAA
CAGCGGCGGTTCTGGATCAGGCGGATACAACGAAGGAAACAGCGGCGGAGGCCAATACTTTGGCGGAGGCCAAAATGATA
ATCCGTTCAGCGGAAATCAGAACAACCAGAGACGAAATCAAGGGAACAGCTTTAATGATGATCCATTTGCCAACGACGGC
AAGCCGATTGACATCTCGGATGATGATCTTCCGTTCTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-103)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssbA Bacillus subtilis subsp. subtilis str. 168

98.256

100

0.983
  ssb Latilactobacillus sakei subsp. sakei 23K

58.757

100

0.605
  ssbB Bacillus subtilis subsp. subtilis str. 168

64.151

61.628

0.395
  ssb Glaesserella parasuis strain SC1401

36.264

100

0.384