Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilM   Type   Machinery gene
Locus tag   RNZ41_RS08080 Genome accession   NZ_CP135138
Coordinates   1811295..1812347 (-) Length   350 a.a.
NCBI ID   WP_314027042.1    Uniprot ID   A0AA96KXU1
Organism   Moraxella sp. DOX410     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1806295..1817347
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RNZ41_RS08055 (RNZ41_08055) - 1806348..1806884 (-) 537 WP_062334134.1 shikimate kinase -
  RNZ41_RS08060 (RNZ41_08060) pilQ 1806992..1809322 (-) 2331 WP_314027039.1 type IV pilus secretin PilQ -
  RNZ41_RS08065 (RNZ41_08065) - 1809340..1809873 (-) 534 WP_314027040.1 pilus assembly protein PilP -
  RNZ41_RS08070 (RNZ41_08070) - 1809863..1810621 (-) 759 WP_409950575.1 type 4a pilus biogenesis protein PilO -
  RNZ41_RS08075 (RNZ41_08075) - 1810624..1811295 (-) 672 WP_314027041.1 PilN domain-containing protein -
  RNZ41_RS08080 (RNZ41_08080) pilM 1811295..1812347 (-) 1053 WP_314027042.1 pilus assembly protein PilM Machinery gene
  RNZ41_RS08085 (RNZ41_08085) - 1812549..1815278 (+) 2730 WP_314027043.1 penicillin-binding protein 1A -
  RNZ41_RS08090 (RNZ41_08090) - 1815408..1815926 (-) 519 WP_060996320.1 DUF6586 family protein -

Sequence

Protein


Download         Length: 350 a.a.        Molecular weight: 38368.77 Da        Isoelectric Point: 4.5213

>NTDB_id=885548 RNZ41_RS08080 WP_314027042.1 1811295..1812347(-) (pilM) [Moraxella sp. DOX410]
MRLFTKNNKLVVGVDITTTAIKMVEITRQQGLFHLRNYGIEPLPRGAVVDKNIVDIEAVSDALARLSRSRGFSSKNIATA
VAGSSVISKIIEMEADLTELERESLIRLDADQYIPYPLSEVNLDFEVIGPSATPDMCKVLLVASRTENVDQRVDAGALAG
LDTKIVDVESYAVERAFQLMVDSLPGQPQHIALIDIGHSQTTLYIAKDGEFVYSREQLFGGAQLTESIQNRYGLTFEEAM
INKRTLSLPDDYYTDVLLPFLDAIVQQITRSLQFYFSSSQNSQVDYILLGGGSASIAGLASMVEQKLGTRTGIANAFSNM
TINNHINTELLIMDAPSLMAACGLALRSFD

Nucleotide


Download         Length: 1053 bp        

>NTDB_id=885548 RNZ41_RS08080 WP_314027042.1 1811295..1812347(-) (pilM) [Moraxella sp. DOX410]
GTGAGGTTATTTACAAAAAACAACAAGCTAGTCGTTGGGGTAGATATCACCACCACTGCGATCAAAATGGTTGAAATAAC
ACGGCAGCAAGGTCTATTTCATTTAAGAAATTACGGCATTGAACCGTTACCCCGCGGTGCTGTTGTTGATAAAAATATTG
TAGATATTGAAGCGGTCAGTGACGCCCTCGCAAGATTATCTCGTAGCAGAGGTTTTTCCAGCAAAAATATTGCGACAGCC
GTAGCAGGCTCTTCGGTTATTAGCAAAATCATTGAGATGGAAGCGGATCTCACAGAGCTTGAACGAGAATCCCTTATACG
TCTAGATGCTGACCAATATATTCCCTATCCTTTATCAGAAGTTAATTTAGATTTTGAAGTGATTGGCCCTTCAGCTACGC
CTGATATGTGTAAGGTATTGTTAGTTGCCTCTCGCACTGAAAACGTTGACCAACGTGTCGACGCGGGTGCTTTGGCGGGG
CTGGATACTAAAATTGTGGATGTGGAGTCTTACGCAGTTGAACGCGCCTTTCAATTGATGGTCGATAGCTTGCCAGGTCA
ACCTCAGCATATAGCCCTTATTGATATCGGGCACAGCCAAACCACGCTTTATATTGCAAAGGACGGGGAGTTTGTGTACA
GCCGTGAACAGCTTTTTGGCGGCGCCCAGTTAACTGAAAGTATTCAAAATCGTTATGGTTTGACGTTCGAGGAGGCGATG
ATTAATAAGCGCACCCTGTCATTGCCGGATGATTACTATACGGATGTGTTACTGCCATTTTTAGATGCTATTGTGCAGCA
AATCACCCGTTCGCTGCAGTTTTATTTTTCATCCAGCCAAAATAGCCAAGTAGACTATATTTTGTTGGGCGGTGGTAGTG
CCAGCATTGCGGGTCTAGCGAGCATGGTTGAACAAAAACTTGGTACCCGCACAGGTATCGCCAATGCATTTTCAAATATG
ACGATTAATAACCATATCAACACTGAATTACTGATTATGGACGCGCCAAGCCTGATGGCGGCTTGTGGCTTGGCGTTACG
GAGTTTTGATTAA

Domains

Predicted by InterproScan.

Type IV pilus assembly protein PilM; (PilM_2)

(13-349)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilM Acinetobacter baumannii D1279779

52.422

100

0.526
  comM Acinetobacter nosocomialis M2

52.137

100

0.523
  comM Acinetobacter baylyi ADP1

49.288

100

0.494
  pilM Legionella pneumophila strain ERS1305867

43.343

100

0.437