Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   RO838_RS03550 Genome accession   NZ_CP135134
Coordinates   816893..817387 (+) Length   164 a.a.
NCBI ID   WP_004089231.1    Uniprot ID   Q87DQ5
Organism   Xylella fastidiosa strain CFBP8478     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 811893..822387
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RO838_RS03535 (RO838_03535) cyoB 812221..814218 (-) 1998 WP_057682554.1 cytochrome o ubiquinol oxidase subunit I -
  RO838_RS03540 (RO838_03540) cyoA 814212..815171 (-) 960 WP_011097726.1 ubiquinol oxidase subunit II -
  RO838_RS03545 (RO838_03545) - 815640..816641 (-) 1002 WP_057682553.1 polyprenyl synthetase family protein -
  RO838_RS03550 (RO838_03550) ssb 816893..817387 (+) 495 WP_004089231.1 single-stranded DNA-binding protein Machinery gene
  RO838_RS03555 (RO838_03555) - 817662..817826 (+) 165 WP_014607674.1 hypothetical protein -
  RO838_RS03560 (RO838_03560) - 819035..819946 (+) 912 WP_081033426.1 class I SAM-dependent methyltransferase -
  RO838_RS03565 (RO838_03565) - 820259..821455 (+) 1197 WP_057682592.1 cation:proton antiporter -
  RO838_RS03570 (RO838_03570) gloA 821616..822143 (-) 528 WP_057682552.1 lactoylglutathione lyase -

Sequence

Protein


Download         Length: 164 a.a.        Molecular weight: 18227.20 Da        Isoelectric Point: 5.9527

>NTDB_id=885515 RO838_RS03550 WP_004089231.1 816893..817387(+) (ssb) [Xylella fastidiosa strain CFBP8478]
MARGINKVILVGNLGNDPDIKYTQGGMTITTISLATTSVRKDKDGNTQERTEWHRVKFFGKLGEIAGEYLRKGSQCYIEG
SIRYDKFTGQDGQERYVTEIVADEMQMLGGRSDGGGMGGGGERPQRQTSQRQDYAPRRQTRQPSQSPQSSPPPMDDFADD
DIPF

Nucleotide


Download         Length: 495 bp        

>NTDB_id=885515 RO838_RS03550 WP_004089231.1 816893..817387(+) (ssb) [Xylella fastidiosa strain CFBP8478]
ATGGCCCGTGGTATCAATAAAGTCATCCTCGTCGGTAATCTCGGTAACGATCCGGATATCAAATACACCCAAGGTGGTAT
GACGATCACTACCATCAGCTTGGCGACAACCAGTGTTCGTAAGGACAAGGATGGCAATACCCAGGAGCGGACCGAATGGC
ACAGGGTCAAGTTTTTCGGAAAACTCGGTGAGATTGCCGGGGAATATCTACGTAAGGGATCACAGTGCTATATCGAAGGG
AGCATTCGCTATGACAAGTTCACTGGCCAGGATGGCCAAGAGCGCTATGTTACAGAGATTGTTGCTGATGAGATGCAAAT
GTTGGGTGGCCGTAGTGATGGTGGCGGTATGGGCGGGGGTGGTGAGCGCCCACAGCGTCAAACATCGCAGCGTCAGGATT
ACGCCCCACGTCGCCAGACCCGTCAGCCGTCACAGTCGCCGCAATCTTCACCGCCGCCGATGGACGATTTCGCTGATGAC
GATATTCCTTTCTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(5-108)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB Q87DQ5

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

49.153

100

0.53
  ssb Glaesserella parasuis strain SC1401

46.927

100

0.512
  ssb Neisseria meningitidis MC58

41.618

100

0.439
  ssb Neisseria gonorrhoeae MS11

41.04

100

0.433