Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   QN339_RS08405 Genome accession   NZ_CP135104
Coordinates   1658180..1658671 (-) Length   163 a.a.
NCBI ID   WP_000609586.1    Uniprot ID   A0AAD2WUV1
Organism   Streptococcus agalactiae strain MA15     
Function   ssDNA binding (predicted from homology)   
DNA processing

Related MGE

Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.

Gene-MGE association summary

MGE type MGE coordinates Gene coordinates Relative position Distance (bp)
IScluster/Tn 1659310..1660115 1658180..1658671 flank 639


Gene organization within MGE regions


Location: 1658180..1660115
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QN339_RS08405 (QN339_08390) ssb 1658180..1658671 (-) 492 WP_000609586.1 single-stranded DNA-binding protein Machinery gene
  QN339_RS08410 (QN339_08395) rpsF 1658683..1658970 (-) 288 WP_001151773.1 30S ribosomal protein S6 -
  QN339_RS08415 (QN339_08400) - 1659310..1660115 (+) 806 WP_088181596.1 IS5-like element IS1381A family transposase -

Sequence

Protein


Download         Length: 163 a.a.        Molecular weight: 18155.77 Da        Isoelectric Point: 4.9119

>NTDB_id=885442 QN339_RS08405 WP_000609586.1 1658180..1658671(-) (ssb) [Streptococcus agalactiae strain MA15]
MINNVVLVGRMTRDAELRYTPSNQAVATFSLAVNRNFKNQSGEREADFINCVIWRQQAENLANWAKKGALVGITGRIQTR
NYENQQGQRVYVTEVVAESFQLLESRATREGGSSNSYNNGGYNNAPSNNSYSASSQQTPNFSRDESPFGNSNPMDISDDD
LPF

Nucleotide


Download         Length: 492 bp        

>NTDB_id=885442 QN339_RS08405 WP_000609586.1 1658180..1658671(-) (ssb) [Streptococcus agalactiae strain MA15]
ATGATTAATAATGTAGTACTTGTAGGTCGCATGACCCGTGATGCAGAACTTCGTTATACACCAAGTAATCAAGCGGTAGC
CACTTTTTCACTTGCAGTTAATCGTAATTTTAAAAATCAATCTGGCGAACGTGAGGCTGATTTTATTAACTGTGTTATTT
GGCGCCAACAAGCTGAAAACTTGGCTAACTGGGCAAAAAAAGGTGCTTTGGTTGGAATTACAGGTCGTATCCAAACACGT
AATTATGAAAACCAACAAGGTCAACGTGTCTATGTAACAGAAGTTGTTGCGGAAAGTTTCCAATTATTGGAAAGTCGTGC
TACACGAGAAGGTGGTTCATCTAACTCTTATAATAACGGTGGCTATAACAATGCTCCGTCAAATAATAGTTATTCAGCTT
CTTCTCAACAAACGCCTAATTTTAGTCGTGATGAGAGTCCGTTTGGTAACTCAAATCCAATGGATATTTCAGATGATGAT
CTACCATTCTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-103)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Latilactobacillus sakei subsp. sakei 23K

60.465

100

0.638
  ssbA Bacillus subtilis subsp. subtilis str. 168

58.286

100

0.626
  ssbB Streptococcus sobrinus strain NIDR 6715-7

55.963

66.871

0.374
  ssbB Bacillus subtilis subsp. subtilis str. 168

56.604

65.031

0.368