Detailed information    

insolico Bioinformatically predicted

Overview

Name   covR   Type   Regulator
Locus tag   QN339_RS08000 Genome accession   NZ_CP135104
Coordinates   1578271..1578960 (-) Length   229 a.a.
NCBI ID   WP_000516681.1    Uniprot ID   -
Organism   Streptococcus agalactiae strain MA15     
Function   repress comR expression (predicted from homology)   
Competence regulation

Genomic Context

Location: 1573271..1583960
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QN339_RS07980 (QN339_07960) dnaI 1574074..1574976 (-) 903 WP_000843626.1 primosomal protein DnaI -
  QN339_RS07985 (QN339_07965) - 1574973..1576148 (-) 1176 WP_000074512.1 DnaD domain protein -
  QN339_RS07990 (QN339_07970) nrdR 1576148..1576627 (-) 480 WP_001203682.1 transcriptional regulator NrdR -
  QN339_RS07995 (QN339_07975) - 1576776..1578281 (-) 1506 WP_410534266.1 ATP-binding protein -
  QN339_RS08000 (QN339_07980) covR 1578271..1578960 (-) 690 WP_000516681.1 response regulator transcription factor Regulator
  QN339_RS08005 (QN339_07985) - 1579195..1579728 (-) 534 WP_000927549.1 YceD family protein -
  QN339_RS08010 (QN339_07990) htpX 1579833..1580723 (-) 891 WP_000966825.1 zinc metalloprotease HtpX -
  QN339_RS08015 (QN339_07995) - 1580744..1581298 (-) 555 WP_000537055.1 LemA family protein -
  QN339_RS08020 (QN339_08000) rsmG 1581426..1582139 (+) 714 WP_000188797.1 16S rRNA (guanine(527)-N(7))-methyltransferase RsmG -
  QN339_RS08025 (QN339_08005) - 1582154..1583533 (+) 1380 WP_000680112.1 TrkH family potassium uptake protein -

Sequence

Protein


Download         Length: 229 a.a.        Molecular weight: 26547.55 Da        Isoelectric Point: 4.8094

>NTDB_id=885440 QN339_RS08000 WP_000516681.1 1578271..1578960(-) (covR) [Streptococcus agalactiae strain MA15]
MGKKILIIEDEKNLARFVSLELLHEGYDVVVETNGREGLDTALEKDFDLILLDLMLPEMDGFEITRRLQAEKTTYIMMMT
ARDSVMDIVAGLDRGADDYIVKPFAIEELLARVRAIFRRQEIETKTKEKGDSGSFRDLSLNTHNRSAMRGDEEISLTKRE
FDLLNVLMTNMNRVMTREELLEHVWKYDVAAETNVVDVYIRYLRGKIDIPGRESYIQTVRGMGYVIREK

Nucleotide


Download         Length: 690 bp        

>NTDB_id=885440 QN339_RS08000 WP_000516681.1 1578271..1578960(-) (covR) [Streptococcus agalactiae strain MA15]
ATGGGTAAAAAGATCTTAATAATCGAAGATGAGAAAAATTTAGCTCGCTTCGTCTCGTTAGAACTACTACATGAAGGATA
TGATGTTGTTGTTGAAACAAACGGTCGTGAAGGATTGGACACAGCATTAGAAAAAGATTTTGATTTGATTCTACTGGATT
TAATGCTTCCAGAGATGGATGGTTTCGAAATCACACGTCGCCTGCAGGCTGAAAAAACAACCTATATCATGATGATGACA
GCACGTGATTCTGTTATGGATATTGTAGCTGGTCTTGATCGTGGAGCAGATGATTATATTGTTAAGCCGTTTGCAATCGA
AGAATTATTAGCACGTGTTAGGGCGATTTTCCGACGCCAAGAAATTGAAACGAAGACAAAAGAAAAAGGTGATAGCGGTA
GTTTCCGTGATTTATCATTAAATACTCATAATCGTTCAGCGATGCGTGGTGATGAGGAAATTTCACTAACAAAACGTGAA
TTTGATTTATTGAATGTCTTGATGACAAATATGAATCGTGTTATGACACGAGAAGAGTTGCTAGAACATGTTTGGAAATA
CGATGTGGCAGCAGAGACAAACGTTGTTGATGTTTATATCCGTTACCTAAGAGGTAAAATTGATATCCCAGGTCGTGAAT
CATATATTCAAACTGTTCGCGGAATGGGCTATGTGATTCGTGAAAAATGA

Domains

Predicted by InterproScan.

Response regulator receiver domain (Response_reg)

(5-114)

Transcriptional regulatory protein, C terminal (Trans_reg_C)

(152-225)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  covR Streptococcus salivarius strain HSISS4

79.476

100

0.795
  covR Lactococcus lactis subsp. lactis strain DGCC12653

66.228

99.563

0.659
  vicR Streptococcus mutans UA159

45.887

100

0.463
  micA Streptococcus pneumoniae Cp1015

43.478

100

0.437