Detailed information    

insolico Bioinformatically predicted

Overview

Name   covR   Type   Regulator
Locus tag   QN329_RS05090 Genome accession   NZ_CP135103
Coordinates   952041..952730 (+) Length   229 a.a.
NCBI ID   WP_000516681.1    Uniprot ID   -
Organism   Streptococcus agalactiae strain HU36/21     
Function   repress comR expression (predicted from homology)   
Competence regulation

Genomic Context

Location: 947041..957730
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QN329_RS05065 (QN329_05090) - 947468..948847 (-) 1380 WP_000680112.1 TrkH family potassium uptake protein -
  QN329_RS05070 (QN329_05095) rsmG 948862..949575 (-) 714 WP_000188792.1 16S rRNA (guanine(527)-N(7))-methyltransferase RsmG -
  QN329_RS05075 (QN329_05100) - 949703..950257 (+) 555 WP_000537056.1 LemA family protein -
  QN329_RS05080 (QN329_05105) htpX 950278..951168 (+) 891 WP_000966821.1 zinc metalloprotease HtpX -
  QN329_RS05085 (QN329_05110) - 951273..951806 (+) 534 WP_000927540.1 YceD family protein -
  QN329_RS05090 (QN329_05115) covR 952041..952730 (+) 690 WP_000516681.1 response regulator transcription factor Regulator
  QN329_RS05095 (QN329_05120) - 952720..954225 (+) 1506 WP_000791116.1 HAMP domain-containing histidine kinase -
  QN329_RS05100 (QN329_05125) nrdR 954374..954853 (+) 480 WP_001203682.1 transcriptional regulator NrdR -
  QN329_RS05105 (QN329_05130) - 954853..956028 (+) 1176 WP_000074509.1 DnaD domain protein -
  QN329_RS05110 (QN329_05135) dnaI 956025..956927 (+) 903 WP_000843624.1 primosomal protein DnaI -

Sequence

Protein


Download         Length: 229 a.a.        Molecular weight: 26547.55 Da        Isoelectric Point: 4.8094

>NTDB_id=885374 QN329_RS05090 WP_000516681.1 952041..952730(+) (covR) [Streptococcus agalactiae strain HU36/21]
MGKKILIIEDEKNLARFVSLELLHEGYDVVVETNGREGLDTALEKDFDLILLDLMLPEMDGFEITRRLQAEKTTYIMMMT
ARDSVMDIVAGLDRGADDYIVKPFAIEELLARVRAIFRRQEIETKTKEKGDSGSFRDLSLNTHNRSAMRGDEEISLTKRE
FDLLNVLMTNMNRVMTREELLEHVWKYDVAAETNVVDVYIRYLRGKIDIPGRESYIQTVRGMGYVIREK

Nucleotide


Download         Length: 690 bp        

>NTDB_id=885374 QN329_RS05090 WP_000516681.1 952041..952730(+) (covR) [Streptococcus agalactiae strain HU36/21]
ATGGGTAAAAAGATCTTAATAATCGAAGATGAGAAAAATTTAGCTCGCTTCGTCTCGTTAGAACTACTACATGAAGGATA
TGATGTTGTTGTTGAAACAAACGGTCGTGAAGGATTGGACACAGCATTAGAAAAAGATTTTGATTTGATTTTACTGGATT
TAATGCTTCCAGAGATGGATGGTTTCGAAATCACACGTCGCCTGCAGGCTGAAAAAACAACCTATATCATGATGATGACA
GCACGTGATTCTGTTATGGATATTGTAGCTGGTCTTGATCGTGGAGCAGATGATTATATTGTTAAGCCGTTTGCAATCGA
AGAATTATTAGCACGTGTTAGGGCGATTTTCCGACGCCAAGAAATTGAAACGAAGACAAAAGAAAAAGGTGATAGCGGTA
GTTTCCGTGATTTATCATTAAATACTCATAATCGTTCAGCGATGCGTGGTGATGAGGAAATTTCACTAACAAAACGTGAA
TTTGATTTGTTGAATGTCTTGATGACAAATATGAATCGTGTTATGACACGAGAAGAGTTGCTAGAACATGTTTGGAAATA
CGATGTGGCAGCAGAGACAAACGTTGTTGATGTTTATATCCGTTACCTAAGAGGTAAAATTGATATCCCAGGTCGTGAAT
CATATATTCAAACTGTTCGCGGAATGGGCTATGTGATTCGTGAAAAATAA

Domains

Predicted by InterproScan.

Response regulator receiver domain (Response_reg)

(5-114)

Transcriptional regulatory protein, C terminal (Trans_reg_C)

(152-225)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  covR Streptococcus salivarius strain HSISS4

79.476

100

0.795
  covR Lactococcus lactis subsp. lactis strain DGCC12653

66.228

99.563

0.659
  vicR Streptococcus mutans UA159

45.887

100

0.463
  micA Streptococcus pneumoniae Cp1015

43.478

100

0.437