Detailed information
Bioinformatically predicted
Overview
| Name | ssbA | Type | Machinery gene |
| Locus tag | QN329_RS04690 | Genome accession | NZ_CP135103 |
| Coordinates | 872291..872782 (+) | Length | 163 a.a. |
| NCBI ID | WP_000609584.1 | Uniprot ID | - |
| Organism | Streptococcus agalactiae strain HU36/21 | ||
| Function | ssDNA binding (predicted from homology) DNA processing |
||
Genomic Context
Location: 867291..877782
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| QN329_RS04665 (QN329_04695) | - | 868063..868563 (+) | 501 | WP_000446807.1 | phosphatase PAP2 family protein | - |
| QN329_RS04670 (QN329_04700) | trxA | 868626..868958 (+) | 333 | WP_001932060.1 | thioredoxin | - |
| QN329_RS04675 (QN329_04705) | - | 869004..869597 (-) | 594 | WP_000402388.1 | helix-turn-helix domain-containing protein | - |
| QN329_RS04680 (QN329_04710) | mutY | 869774..870928 (-) | 1155 | WP_161512869.1 | A/G-specific adenine glycosylase | - |
| QN329_RS04685 (QN329_04715) | rpsF | 871992..872279 (+) | 288 | WP_001151773.1 | 30S ribosomal protein S6 | - |
| QN329_RS04690 (QN329_04720) | ssbA | 872291..872782 (+) | 492 | WP_000609584.1 | single-stranded DNA-binding protein | Machinery gene |
| QN329_RS04695 (QN329_04725) | rpsR | 872827..873066 (+) | 240 | WP_000068665.1 | 30S ribosomal protein S18 | - |
| QN329_RS04700 (QN329_04730) | - | 873236..874180 (+) | 945 | WP_000812124.1 | magnesium transporter CorA family protein | - |
| QN329_RS04705 (QN329_04735) | - | 874205..874876 (+) | 672 | WP_000174846.1 | DUF1129 domain-containing protein | - |
Sequence
Protein
Download Length: 163 a.a. Molecular weight: 18175.85 Da Isoelectric Point: 4.9119
>NTDB_id=885372 QN329_RS04690 WP_000609584.1 872291..872782(+) (ssbA) [Streptococcus agalactiae strain HU36/21]
MINNVVLVGRMTRDAELRYTPSNQAVATFSLAVNRNFKNQSGEREADFINCVIWRQQAENLANWAKKGALVGITGRIQTR
NYENQQGQRVYVTEVVAESFQLLESRATREGGSPNSYNNGGYNNAPSNNSYSAPSQQTPNFSRDESPFGNSNPMDISDDD
LPF
MINNVVLVGRMTRDAELRYTPSNQAVATFSLAVNRNFKNQSGEREADFINCVIWRQQAENLANWAKKGALVGITGRIQTR
NYENQQGQRVYVTEVVAESFQLLESRATREGGSPNSYNNGGYNNAPSNNSYSAPSQQTPNFSRDESPFGNSNPMDISDDD
LPF
Nucleotide
Download Length: 492 bp
>NTDB_id=885372 QN329_RS04690 WP_000609584.1 872291..872782(+) (ssbA) [Streptococcus agalactiae strain HU36/21]
ATGATTAATAATGTAGTACTTGTAGGTCGCATGACCCGTGATGCAGAACTTCGTTATACACCAAGTAATCAAGCGGTAGC
CACTTTTTCACTTGCAGTTAATCGTAATTTTAAAAATCAATCTGGCGAACGTGAGGCTGATTTTATTAACTGTGTTATTT
GGCGCCAACAAGCTGAAAACTTGGCTAACTGGGCAAAAAAAGGTGCTTTGGTTGGAATTACAGGTCGTATCCAAACACGT
AATTATGAAAACCAACAAGGTCAACGTGTCTATGTAACAGAAGTTGTTGCGGAAAGTTTCCAATTATTGGAAAGTCGTGC
TACACGAGAAGGTGGTTCACCTAACTCTTATAATAACGGTGGCTATAACAATGCTCCGTCAAATAATAGTTATTCAGCTC
CTTCTCAACAAACACCTAATTTTAGTCGTGATGAGAGTCCGTTTGGTAACTCAAATCCAATGGATATTTCAGATGATGAT
CTACCATTCTAA
ATGATTAATAATGTAGTACTTGTAGGTCGCATGACCCGTGATGCAGAACTTCGTTATACACCAAGTAATCAAGCGGTAGC
CACTTTTTCACTTGCAGTTAATCGTAATTTTAAAAATCAATCTGGCGAACGTGAGGCTGATTTTATTAACTGTGTTATTT
GGCGCCAACAAGCTGAAAACTTGGCTAACTGGGCAAAAAAAGGTGCTTTGGTTGGAATTACAGGTCGTATCCAAACACGT
AATTATGAAAACCAACAAGGTCAACGTGTCTATGTAACAGAAGTTGTTGCGGAAAGTTTCCAATTATTGGAAAGTCGTGC
TACACGAGAAGGTGGTTCACCTAACTCTTATAATAACGGTGGCTATAACAATGCTCCGTCAAATAATAGTTATTCAGCTC
CTTCTCAACAAACACCTAATTTTAGTCGTGATGAGAGTCCGTTTGGTAACTCAAATCCAATGGATATTTCAGATGATGAT
CTACCATTCTAA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| ssbA | Bacillus subtilis subsp. subtilis str. 168 |
57.714 |
100 |
0.62 |
| ssb | Latilactobacillus sakei subsp. sakei 23K |
59.064 |
100 |
0.62 |
| ssbB | Streptococcus sobrinus strain NIDR 6715-7 |
55.963 |
66.871 |
0.374 |
| ssbB | Bacillus subtilis subsp. subtilis str. 168 |
56.604 |
65.031 |
0.368 |