Detailed information    

insolico Bioinformatically predicted

Overview

Name   comYB   Type   Machinery gene
Locus tag   QN329_RS01020 Genome accession   NZ_CP135103
Coordinates   179112..180155 (-) Length   347 a.a.
NCBI ID   WP_228322108.1    Uniprot ID   -
Organism   Streptococcus agalactiae strain HU36/21     
Function   dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 174112..185155
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QN329_RS00980 (QN329_00980) - 174214..174879 (-) 666 WP_000008107.1 CPBP family intramembrane glutamic endopeptidase -
  QN329_RS00985 (QN329_00985) - 174948..175340 (-) 393 WP_001265365.1 hypothetical protein -
  QN329_RS00990 (QN329_00990) - 175443..175580 (-) 138 WP_079263416.1 hypothetical protein -
  QN329_RS00995 (QN329_00995) - 175639..175845 (-) 207 WP_000798241.1 helix-turn-helix transcriptional regulator -
  QN329_RS01000 (QN329_01000) - 175997..177190 (-) 1194 WP_000047537.1 acetate kinase -
  QN329_RS01005 (QN329_01005) comYH 177222..178196 (-) 975 WP_001008568.1 class I SAM-dependent methyltransferase Machinery gene
  QN329_RS01010 (QN329_01010) comGG 178311..178682 (-) 372 WP_000601103.1 competence type IV pilus minor pilin ComGG -
  QN329_RS01015 (QN329_01015) comGF 178660..179115 (-) 456 WP_000793378.1 competence type IV pilus minor pilin ComGF -
  QN329_RS01020 (QN329_01020) comYB 179112..180155 (-) 1044 WP_228322108.1 competence type IV pilus assembly protein ComGB Machinery gene
  QN329_RS01025 (QN329_01025) comYA 180049..181020 (-) 972 WP_000250799.1 competence type IV pilus ATPase ComGA Machinery gene
  QN329_RS01030 (QN329_01030) - 181192..181557 (-) 366 WP_000285373.1 DUF1033 family protein -

Sequence

Protein


Download         Length: 347 a.a.        Molecular weight: 39961.70 Da        Isoelectric Point: 9.9642

>NTDB_id=885355 QN329_RS01020 WP_228322108.1 179112..180155(-) (comYB) [Streptococcus agalactiae strain HU36/21]
MDKWISWLKKDISVRNRHKSKKLSLKKQRKVVQLFNNLFASGFSLTDMVTFLKRSKLLSDCYTDRMNKALLEGKDLSKML
GELGFSDTVITQVALADLHGNISRSLLKIESYLANLLLVRKKVIEVAAYPLILLSFLVLIMIGLRNYLMPQLGENNFATR
LITNVPNIFLLLLAVVLIFSLIFYIIQKRLSRIKVACFLTTIPLVGSYVKLYLTAYYAREWGNLLSQGVELDQIVKVMQN
QKSKLFREIGYDMEEGFLSGKAFHQKVLDYPFFLTELSLMIEYGQVKAKLGTELDIYADEKWEDFFTKLARATQLIQPVI
FIFVALIIVMIYAAMLLPMYQNMEILS

Nucleotide


Download         Length: 1044 bp        

>NTDB_id=885355 QN329_RS01020 WP_228322108.1 179112..180155(-) (comYB) [Streptococcus agalactiae strain HU36/21]
ATAGACAAGTGGATATCTTGGCTGAAGAAGGACATATCAGTAAGAAACAGGCACAAGTCGAAAAAATTATCCCTCAAGAA
ACAACGGAAAGTAGTCCAACTTTTTAATAATCTTTTTGCTAGTGGTTTTTCTTTAACTGATATGGTCACCTTCTTAAAGA
GGAGTAAGTTATTGTCTGATTGTTATACAGATAGGATGAATAAGGCATTATTAGAGGGAAAAGATTTATCAAAAATGTTA
GGAGAGTTAGGTTTTTCTGACACTGTTATCACACAGGTTGCATTAGCTGATTTGCATGGTAACATTTCAAGGAGCCTACT
AAAGATTGAGTCTTATTTAGCTAATCTTTTGTTAGTTAGAAAAAAAGTAATAGAAGTAGCTGCTTACCCATTGATATTAT
TGTCTTTTCTGGTGCTAATTATGATTGGCCTTAGGAATTATTTAATGCCCCAATTAGGAGAAAATAATTTTGCAACTAGA
CTGATTACAAATGTGCCGAATATTTTCTTATTACTTTTAGCAGTTGTACTTATTTTTAGTTTAATATTTTATATTATTCA
AAAGCGATTGTCGCGCATTAAAGTAGCTTGTTTTTTAACAACAATTCCCTTAGTTGGATCATATGTTAAGCTTTATTTAA
CTGCTTACTATGCCCGTGAGTGGGGAAATTTATTAAGTCAAGGTGTTGAATTGGACCAAATTGTTAAAGTAATGCAAAAT
CAGAAATCCAAACTTTTTAGGGAAATAGGGTATGACATGGAAGAAGGTTTTCTATCAGGTAAAGCATTTCACCAAAAAGT
ATTAGACTATCCGTTTTTCTTAACTGAGCTTAGTTTAATGATTGAATATGGTCAAGTTAAGGCGAAATTAGGAACAGAGT
TAGATATATATGCTGATGAGAAGTGGGAGGATTTTTTTACAAAATTAGCTAGAGCGACCCAGTTAATCCAACCCGTTATT
TTTATTTTTGTAGCTCTTATCATTGTTATGATTTATGCAGCAATGCTGTTACCAATGTATCAAAATATGGAGATATTATC
ATGA

Domains

Predicted by InterproScan.

Type II secretion system (T2SS), protein F (T2SSF)

(218-338)

Type II secretion system (T2SS), protein F (T2SSF)

(33-150)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comYB Streptococcus mutans UA140

62.17

98.271

0.611
  comYB Streptococcus mutans UA159

61.877

98.271

0.608
  comYB Streptococcus gordonii str. Challis substr. CH1

56.012

98.271

0.55
  comGB/cglB Streptococcus mitis NCTC 12261

54.925

96.542

0.53
  comGB/cglB Streptococcus mitis SK321

54.328

96.542

0.524
  comGB/cglB Streptococcus pneumoniae Rx1

53.433

96.542

0.516
  comGB/cglB Streptococcus pneumoniae D39

53.433

96.542

0.516
  comGB/cglB Streptococcus pneumoniae R6

53.433

96.542

0.516
  comGB/cglB Streptococcus pneumoniae TIGR4

53.433

96.542

0.516
  comGB Lactococcus lactis subsp. cremoris KW2

50.148

97.118

0.487