Detailed information    

insolico Bioinformatically predicted

Overview

Name   dprA   Type   Machinery gene
Locus tag   OCUAc18_RS00890 Genome accession   NZ_AP024802
Coordinates   185881..187011 (-) Length   376 a.a.
NCBI ID   WP_031967017.1    Uniprot ID   A0A505ZUG3
Organism   Acinetobacter baumannii strain OCU Ac18     
Function   ssDNA binding; loading RecA onto ssDNA (predicted from homology)   
DNA processing

Genomic Context

Location: 180881..192011
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OCUAc18_RS00865 (OCUAc18_01670) - 181056..181820 (-) 765 WP_000786955.1 AraC family transcriptional regulator -
  OCUAc18_RS00870 (OCUAc18_01680) - 181842..183056 (-) 1215 WP_000372840.1 MFS transporter -
  OCUAc18_RS00875 (OCUAc18_01690) - 183193..183843 (+) 651 WP_086222322.1 TetR/AcrR family transcriptional regulator -
  OCUAc18_RS00880 (OCUAc18_01700) - 183949..184869 (+) 921 WP_000084546.1 DMT family transporter -
  OCUAc18_RS00885 (OCUAc18_01710) - 185261..185830 (-) 570 WP_000633612.1 Sua5/YciO/YrdC/YwlC family protein -
  OCUAc18_RS00890 (OCUAc18_01720) dprA 185881..187011 (-) 1131 WP_031967017.1 DNA-processing protein DprA Machinery gene
  OCUAc18_RS00895 (OCUAc18_01730) tsaP 187032..188186 (-) 1155 WP_000755280.1 LysM peptidoglycan-binding domain-containing protein Machinery gene
  OCUAc18_RS00900 (OCUAc18_01740) def 188309..188839 (+) 531 WP_001196539.1 peptide deformylase -
  OCUAc18_RS00905 (OCUAc18_01750) - 188876..189304 (+) 429 WP_000231981.1 DUF2946 family protein -
  OCUAc18_RS00910 (OCUAc18_01760) - 189377..189697 (+) 321 Protein_175 TonB-dependent copper receptor -
  OCUAc18_RS00915 (OCUAc18_01770) - 189699..190193 (-) 495 WP_001003818.1 IS630 family transposase -
  OCUAc18_RS00920 (OCUAc18_01780) - 190241..190546 (-) 306 WP_000122230.1 IS630 transposase-related protein -

Sequence

Protein


Download         Length: 376 a.a.        Molecular weight: 41899.47 Da        Isoelectric Point: 6.4539

>NTDB_id=88534 OCUAc18_RS00890 WP_031967017.1 185881..187011(-) (dprA) [Acinetobacter baumannii strain OCU Ac18]
MLTQLSSHHYHTLKVWYLVQHSLVSFKKIIDYFGNCEKATQPDGLAKWSSLGLHANHLKRVNEFQTPQGQTQFEQLVQQV
CQYTDFILTPDDSGYPIQLLPYTDHPPIIFGKGQAQALLQPQIAIVGSRKPSPHGRQVAYDFAYYLSEKGFFISSGLAYG
IDEAAHQGASAHQRTIAVTGTGLDTTYPAQNKKLAEHILAQNGAIITEFLPGTPPLQQHFPRRNRIVSGLSLGVLVVEAT
LKSGSLITANKAAEQGKTVFAIPGHIYSEFHQGCHQLIREGAILIDHPEQIIEDLALPTQWQSQQQNQTEEANTNTPEIP
EHLIDLYQSLDWVGQNIDQLVIHHNVPVSELTSSLMELELLGLCMQQSGLYLRCRS

Nucleotide


Download         Length: 1131 bp        

>NTDB_id=88534 OCUAc18_RS00890 WP_031967017.1 185881..187011(-) (dprA) [Acinetobacter baumannii strain OCU Ac18]
ATGCTCACTCAACTTTCTTCACACCACTACCACACACTTAAAGTGTGGTATTTGGTGCAGCACTCTTTAGTCAGCTTTAA
AAAAATTATTGATTATTTTGGAAATTGTGAAAAAGCCACTCAACCTGATGGTTTAGCAAAGTGGTCCTCTCTGGGGCTAC
ATGCTAATCACTTAAAACGTGTAAACGAATTTCAAACGCCCCAAGGTCAAACGCAGTTTGAACAACTTGTACAACAAGTT
TGTCAGTATACGGATTTTATTTTAACGCCGGATGACTCAGGCTATCCCATTCAATTACTTCCTTATACAGATCACCCACC
TATTATTTTTGGGAAAGGTCAAGCGCAAGCTTTATTGCAACCTCAAATTGCGATTGTCGGTAGCCGAAAACCAAGCCCAC
ATGGACGACAGGTCGCTTATGATTTTGCCTATTACTTAAGTGAAAAGGGCTTTTTCATTAGTAGCGGTCTGGCTTATGGC
ATTGATGAAGCCGCTCATCAAGGTGCATCTGCTCATCAACGTACCATTGCAGTGACGGGTACGGGCTTAGACACTACTTA
TCCAGCTCAAAATAAAAAACTTGCAGAACATATTTTGGCTCAAAACGGCGCCATTATTACTGAGTTTTTACCGGGTACAC
CACCATTACAACAGCATTTTCCACGTAGAAACCGAATTGTCAGCGGTTTGAGTTTAGGCGTTTTGGTGGTAGAAGCGACA
TTAAAAAGCGGCTCACTCATCACGGCCAATAAAGCTGCTGAACAAGGTAAAACCGTATTCGCGATTCCGGGCCATATTTA
TAGCGAGTTTCATCAAGGATGCCATCAACTTATCCGTGAAGGTGCAATTTTAATCGACCATCCTGAACAGATTATTGAGG
ATCTTGCTTTACCAACCCAATGGCAAAGTCAGCAACAAAATCAAACTGAAGAAGCTAATACGAATACTCCAGAAATTCCT
GAGCATTTGATTGACCTTTATCAGTCTTTAGACTGGGTAGGACAAAATATTGACCAGCTTGTAATTCATCATAATGTGCC
GGTTTCTGAACTGACCTCTTCACTAATGGAACTAGAACTACTCGGTTTATGTATGCAACAATCAGGGCTGTATTTACGTT
GTCGTTCTTAG

Domains

Predicted by InterproScan.

DNA recombination-mediator protein A (DNA_processg_A)

(87-285)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A505ZUG3

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  dprA Acinetobacter baumannii D1279779

97.606

100

0.976
  dprA Acinetobacter baumannii strain A118

97.34

100

0.973
  dprA Acinetobacter baylyi ADP1

70.341

100

0.713
  dprA Vibrio cholerae strain A1552

42.9

88.032

0.378

Multiple sequence alignment