Detailed information    

insolico Bioinformatically predicted

Overview

Name   comFC/cflB   Type   Machinery gene
Locus tag   RMP64_RS09210 Genome accession   NZ_CP135093
Coordinates   1881169..1881834 (-) Length   221 a.a.
NCBI ID   WP_043032914.1    Uniprot ID   A0A116QBH8
Organism   Streptococcus suis strain 1652329     
Function   ssDNA transport into the cell (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1876169..1886834
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RMP64_RS09205 (RMP64_09205) hpf 1880550..1881092 (-) 543 WP_004194117.1 ribosome hibernation-promoting factor, HPF/YfiA family -
  RMP64_RS09210 (RMP64_09210) comFC/cflB 1881169..1881834 (-) 666 WP_043032914.1 ComF family protein Machinery gene
  RMP64_RS09215 (RMP64_09215) comFA/cflA 1881827..1883119 (-) 1293 WP_024394375.1 DEAD/DEAH box helicase Machinery gene
  RMP64_RS09220 (RMP64_09220) - 1883176..1883808 (+) 633 WP_024394374.1 YigZ family protein -
  RMP64_RS09225 (RMP64_09225) cysK 1883898..1884824 (+) 927 WP_029178437.1 cysteine synthase A -
  RMP64_RS09230 (RMP64_09230) - 1884850..1885221 (-) 372 WP_024394815.1 S1 RNA-binding domain-containing protein -
  RMP64_RS09235 (RMP64_09235) - 1885223..1886623 (-) 1401 WP_024394814.1 bifunctional Cof-type HAD-IIB family hydrolase/peptidylprolyl isomerase -

Sequence

Protein


Download         Length: 221 a.a.        Molecular weight: 25835.63 Da        Isoelectric Point: 8.2726

>NTDB_id=885051 RMP64_RS09210 WP_043032914.1 1881169..1881834(-) (comFC/cflB) [Streptococcus suis strain 1652329]
MSNCLLCDQTMKNKTRFSDLIFFSKEKSGICEECFSTFEEIAEQHCPHCYKNGESESCKDCQYWQNQGKPVVHTALYQYN
QAMAHYFSRYKFQGDYVLRNIFAKKLRIALSQFPDYTIVPIPISQKRLSERGFNQVEGLLNATNIPYQSLLGKYESQKQS
SKNRAERLEAKQMFYLLDEKEVPEKILLFDDIYTTGATIQLAVELFMKIGRKEIKTFSLTR

Nucleotide


Download         Length: 666 bp        

>NTDB_id=885051 RMP64_RS09210 WP_043032914.1 1881169..1881834(-) (comFC/cflB) [Streptococcus suis strain 1652329]
ATGTCTAATTGTCTATTGTGTGATCAAACTATGAAAAATAAAACAAGATTTTCAGATCTCATCTTCTTTAGTAAAGAAAA
ATCGGGCATCTGTGAAGAATGTTTTTCGACTTTTGAGGAAATAGCAGAGCAACACTGTCCACATTGTTATAAAAATGGGG
AATCGGAAAGTTGCAAGGATTGTCAGTACTGGCAGAATCAAGGGAAACCAGTTGTCCACACAGCTTTGTACCAATATAAT
CAAGCGATGGCACATTATTTTAGTCGCTACAAATTTCAAGGAGACTATGTTTTAAGAAATATTTTTGCTAAAAAGCTTAG
AATAGCGTTAAGCCAATTTCCTGACTACACAATTGTTCCCATACCAATTAGTCAAAAACGACTATCAGAACGCGGTTTTA
ATCAAGTGGAAGGACTTTTGAATGCTACAAATATTCCCTATCAGTCCCTTCTTGGAAAGTATGAAAGCCAAAAACAATCA
TCTAAAAATCGTGCAGAGAGACTAGAAGCAAAACAGATGTTCTATCTATTAGATGAAAAAGAAGTGCCAGAAAAAATATT
ATTATTCGACGATATATATACAACAGGAGCTACAATCCAACTTGCTGTAGAACTTTTCATGAAAATTGGTAGGAAAGAAA
TCAAAACATTTTCACTAACACGATAA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A116QBH8

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comFC/cflB Streptococcus mitis SK321

49.083

98.643

0.484
  comFC/cflB Streptococcus pneumoniae Rx1

49.083

98.643

0.484
  comFC/cflB Streptococcus pneumoniae D39

49.083

98.643

0.484
  comFC/cflB Streptococcus pneumoniae R6

49.083

98.643

0.484
  comFC/cflB Streptococcus pneumoniae TIGR4

49.083

98.643

0.484
  comFC/cflB Streptococcus mitis NCTC 12261

49.083

98.643

0.484