Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssbA   Type   Machinery gene
Locus tag   RMP65_RS08345 Genome accession   NZ_CP135089
Coordinates   1703845..1704339 (-) Length   164 a.a.
NCBI ID   WP_015647334.1    Uniprot ID   A0A0Z8R9G9
Organism   Streptococcus suis strain ID34567     
Function   ssDNA binding (predicted from homology)   
DNA processing

Related MGE

Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.

Gene-MGE association summary

MGE type MGE coordinates Gene coordinates Relative position Distance (bp)
IScluster/Tn 1700537..1703216 1703845..1704339 flank 629


Gene organization within MGE regions


Location: 1700537..1704339
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RMP65_RS08330 (RMP65_08330) - 1700537..1701739 (+) 1203 WP_109371051.1 IS110 family transposase -
  RMP65_RS08335 (RMP65_08335) - 1701960..1703216 (+) 1257 WP_313681155.1 ISL3 family transposase -
  RMP65_RS08340 (RMP65_08340) rpsR 1703573..1703812 (-) 240 WP_002939250.1 30S ribosomal protein S18 -
  RMP65_RS08345 (RMP65_08345) ssbA 1703845..1704339 (-) 495 WP_015647334.1 single-stranded DNA-binding protein Machinery gene

Sequence

Protein


Download         Length: 164 a.a.        Molecular weight: 18132.89 Da        Isoelectric Point: 4.7294

>NTDB_id=884946 RMP65_RS08345 WP_015647334.1 1703845..1704339(-) (ssbA) [Streptococcus suis strain ID34567]
MINNVVLVGRMTRDAELRYTPSNQAVATFTLAVNRNFKNQNGEREADFINVVIWRQQAENLANWAKKGALIGVTGRIQTR
SYDNQQGQRVYVTEVVAESFQLLESRTAREGQGGGYSAGNSFAGGNDYNSPYQAPAQSTPNFAREESPFGTSNPMDISDD
DLPF

Nucleotide


Download         Length: 495 bp        

>NTDB_id=884946 RMP65_RS08345 WP_015647334.1 1703845..1704339(-) (ssbA) [Streptococcus suis strain ID34567]
ATGATTAATAATGTAGTATTGGTTGGTCGTATGACCCGTGATGCAGAACTTCGTTATACTCCGTCTAATCAAGCTGTTGC
GACTTTTACTTTGGCGGTTAACCGCAATTTTAAAAATCAAAACGGTGAGCGTGAAGCGGACTTTATCAACGTAGTCATTT
GGCGTCAACAAGCTGAGAATTTGGCGAATTGGGCTAAGAAAGGTGCTCTGATTGGTGTTACTGGTCGTATCCAGACTCGT
AGCTATGACAATCAGCAAGGGCAACGTGTCTACGTTACTGAGGTAGTTGCAGAAAGTTTCCAACTCTTGGAAAGCCGTAC
TGCCCGTGAAGGTCAAGGTGGAGGCTATTCAGCTGGCAACTCGTTTGCTGGAGGAAATGATTATAACTCACCTTATCAAG
CACCTGCACAATCTACACCAAACTTCGCTCGAGAAGAAAGTCCATTTGGAACAAGTAATCCAATGGACATATCAGACGAT
GACCTACCATTCTAG

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-103)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A0Z8R9G9

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssbA Bacillus subtilis subsp. subtilis str. 168

57.558

100

0.604
  ssb Latilactobacillus sakei subsp. sakei 23K

56.322

100

0.598
  ssb Glaesserella parasuis strain SC1401

32.105

100

0.372
  ssbB Streptococcus sobrinus strain NIDR 6715-7

55.046

66.463

0.366