Detailed information    

insolico Bioinformatically predicted

Overview

Name   coiA   Type   Machinery gene
Locus tag   RMP65_RS06695 Genome accession   NZ_CP135089
Coordinates   1359456..1360388 (-) Length   310 a.a.
NCBI ID   WP_313912487.1    Uniprot ID   -
Organism   Streptococcus suis strain ID34567     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1354456..1365388
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RMP65_RS06670 (RMP65_06670) - 1355094..1355813 (-) 720 WP_313681037.1 O-methyltransferase -
  RMP65_RS06675 (RMP65_06675) - 1355888..1356436 (-) 549 WP_109371644.1 DUF6630 family protein -
  RMP65_RS06680 (RMP65_06680) - 1356447..1356890 (-) 444 WP_109371646.1 hypothetical protein -
  RMP65_RS06685 (RMP65_06685) pepF 1356892..1358694 (-) 1803 WP_024410963.1 oligoendopeptidase F Regulator
  RMP65_RS06690 (RMP65_06690) - 1358767..1359402 (-) 636 WP_024410962.1 hypothetical protein -
  RMP65_RS06695 (RMP65_06695) coiA 1359456..1360388 (-) 933 WP_313912487.1 competence protein CoiA family protein Machinery gene
  RMP65_RS06700 (RMP65_06700) - 1360456..1361022 (+) 567 WP_024391871.1 GNAT family N-acetyltransferase -
  RMP65_RS06705 (RMP65_06705) metG 1361052..1363055 (-) 2004 WP_024410960.1 methionine--tRNA ligase -
  RMP65_RS06710 (RMP65_06710) - 1363295..1364044 (-) 750 WP_024401788.1 hypothetical protein -

Sequence

Protein


Download         Length: 310 a.a.        Molecular weight: 36234.94 Da        Isoelectric Point: 8.8641

>NTDB_id=884935 RMP65_RS06695 WP_313912487.1 1359456..1360388(-) (coiA) [Streptococcus suis strain ID34567]
MLVALDEDRQIFNLLENPAPQGRYSCPGCGGLVRYKSGKVLRSHFAHVTLRDCTYFSENESAQHLSLKSEIYSWLVEKEQ
VELEKCLPKIGQVADLLVNNGLALEVQCSSLPISRLQVRTKAYYDTGYQVVWLLGKDLWLKERLTNLHKQFLTFSMNMGF
HLWELDDEKKELRLRYLIHEDLRGKVHGLTKVFPFCQGNLLDILRLPFAKQTLSSMTCPMDEDLPRYIAQQLYYKSPKWL
ALQAEAYGRGENLLTKTAFDWYPHIRLPRSAIGFAQIRQDLTPIYQAFNQFYDKVENKRKQVLYPPKMYR

Nucleotide


Download         Length: 933 bp        

>NTDB_id=884935 RMP65_RS06695 WP_313912487.1 1359456..1360388(-) (coiA) [Streptococcus suis strain ID34567]
ATGTTAGTTGCACTTGATGAAGACCGACAAATTTTTAATCTTTTGGAAAATCCTGCGCCACAAGGTCGCTATTCCTGTCC
AGGTTGTGGAGGCCTGGTCCGATACAAATCCGGAAAAGTTCTGCGTTCGCATTTTGCCCATGTCACCCTACGGGATTGCA
CATACTTTTCCGAGAATGAGTCTGCCCAGCACCTCTCCCTCAAATCAGAGATTTACAGCTGGCTTGTGGAAAAGGAGCAG
GTTGAACTTGAAAAATGCTTGCCAAAAATTGGCCAGGTCGCTGATTTATTGGTCAATAATGGTCTGGCCTTGGAAGTCCA
ATGTTCCAGTCTACCGATTTCTCGTTTGCAGGTGAGAACAAAAGCCTATTATGATACTGGTTATCAAGTTGTCTGGTTGC
TTGGTAAGGATTTATGGCTCAAGGAACGACTGACCAATTTGCACAAGCAATTTCTCACTTTTAGTATGAACATGGGCTTT
CATCTTTGGGAACTAGATGATGAGAAGAAAGAGTTAAGACTCCGTTACCTCATTCATGAAGATTTGCGAGGTAAGGTACA
CGGTCTTACGAAAGTCTTTCCCTTTTGTCAGGGAAACTTACTGGACATATTACGTTTACCTTTTGCCAAGCAAACCCTAT
CTAGCATGACTTGTCCAATGGATGAGGATTTGCCTCGCTACATTGCTCAACAGCTTTATTACAAATCCCCCAAATGGCTC
GCCCTGCAAGCAGAGGCTTATGGACGTGGAGAAAATCTACTGACCAAGACAGCATTTGACTGGTATCCCCACATCCGTCT
ACCCCGCTCTGCTATTGGCTTTGCCCAAATTCGCCAAGACCTGACGCCGATTTACCAAGCTTTTAATCAGTTTTACGACA
AAGTGGAAAATAAGAGGAAACAAGTCTTGTATCCACCTAAAATGTATAGATAA

Domains

Predicted by InterproScan.

Competence protein CoiA-like family (CoiA_nuc)

(22-234)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  coiA Streptococcus mitis NCTC 12261

51.768

100

0.519
  coiA Streptococcus pneumoniae TIGR4

50.482

100

0.506
  coiA Streptococcus pneumoniae Rx1

50.482

100

0.506
  coiA Streptococcus pneumoniae D39

50.482

100

0.506
  coiA Streptococcus pneumoniae R6

50.482

100

0.506
  coiA Lactococcus lactis subsp. cremoris KW2

41.562

100

0.429