Detailed information    

insolico Bioinformatically predicted

Overview

Name   cclA/cilC   Type   Machinery gene
Locus tag   RMQ62_RS08490 Genome accession   NZ_CP135065
Coordinates   1745601..1746245 (-) Length   214 a.a.
NCBI ID   WP_014638478.1    Uniprot ID   -
Organism   Streptococcus suis strain ID24665     
Function   processing and translocation of ComGC; assembly of the pseudopilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1740601..1751245
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RMQ62_RS08475 (RMQ62_08475) trpB 1741713..1742888 (+) 1176 WP_313681103.1 tryptophan synthase subunit beta -
  RMQ62_RS08480 (RMQ62_08480) nadE 1743196..1744020 (-) 825 WP_125176031.1 ammonia-dependent NAD(+) synthetase -
  RMQ62_RS08485 (RMQ62_08485) - 1744033..1745493 (-) 1461 WP_313681102.1 nicotinate phosphoribosyltransferase -
  RMQ62_RS08490 (RMQ62_08490) cclA/cilC 1745601..1746245 (-) 645 WP_014638478.1 A24 family peptidase Machinery gene
  RMQ62_RS08495 (RMQ62_08495) - 1746299..1747117 (-) 819 WP_313681101.1 cation diffusion facilitator family transporter -
  RMQ62_RS08500 (RMQ62_08500) - 1747239..1747757 (+) 519 WP_313681100.1 TetR/AcrR family transcriptional regulator -
  RMQ62_RS08505 (RMQ62_08505) - 1747767..1748321 (+) 555 WP_313681099.1 class I SAM-dependent methyltransferase -
  RMQ62_RS08510 (RMQ62_08510) - 1748337..1749116 (-) 780 WP_313741781.1 ABC transporter ATP-binding protein -
  RMQ62_RS08515 (RMQ62_08515) - 1749249..1750586 (+) 1338 WP_002942867.1 hemolysin family protein -

Sequence

Protein


Download         Length: 214 a.a.        Molecular weight: 24233.30 Da        Isoelectric Point: 8.4760

>NTDB_id=884745 RMQ62_RS08490 WP_014638478.1 1745601..1746245(-) (cclA/cilC) [Streptococcus suis strain ID24665]
MKTIILFFLGASIGSFLGLVIDRFPEQSIISPSSHCNACKRRLKAWDLIPILSQLSTKSKCRYCKAKIPYWYLGLEFLAG
LVVLLCHFQVLNLTETILSLAGLVLTIYDIKHQEYPFAVWLVFTFIALVLSQLNWLFCGFLLLAYLTEKWQINIGSGDFL
YLASLALICGFTELLWIIQISSLLGLLVFTIFKPKSIPYVPLLFLSSIPIILCI

Nucleotide


Download         Length: 645 bp        

>NTDB_id=884745 RMQ62_RS08490 WP_014638478.1 1745601..1746245(-) (cclA/cilC) [Streptococcus suis strain ID24665]
ATGAAGACAATTATCCTATTTTTCCTTGGAGCTTCAATCGGCTCCTTCTTGGGTCTGGTCATCGACCGTTTCCCTGAACA
GTCCATTATCTCCCCCTCTAGTCACTGCAATGCCTGCAAGCGACGGCTCAAGGCCTGGGACCTAATACCCATCCTGTCCC
AGCTTTCGACAAAATCTAAATGCCGTTACTGCAAGGCGAAGATACCTTATTGGTATCTGGGATTGGAATTCTTAGCTGGT
CTAGTCGTCCTGCTCTGCCATTTTCAAGTCCTAAACCTAACCGAAACCATTCTCAGCTTAGCAGGGCTAGTTTTAACCAT
TTATGACATCAAGCATCAGGAATATCCCTTTGCTGTCTGGCTCGTTTTTACTTTTATAGCTCTGGTACTCTCCCAGCTCA
ACTGGCTTTTCTGTGGCTTTTTACTCTTGGCCTATCTGACTGAAAAATGGCAAATCAATATTGGTTCTGGTGACTTTCTC
TATCTGGCAAGTTTGGCCTTAATATGTGGATTTACAGAACTCCTCTGGATTATCCAGATTAGTTCCCTCCTAGGGCTTCT
TGTCTTCACTATTTTCAAACCCAAGTCTATTCCCTACGTACCACTCCTTTTTCTTTCAAGTATTCCTATCATTCTGTGCA
TCTAA

Domains

Predicted by InterproScan.

Bacterial Peptidase A24 N-terminal domain (A24_N_bact)

(9-88)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  cclA/cilC Streptococcus mitis SK321

50

99.065

0.495
  cclA/cilC Streptococcus pneumoniae Rx1

49.515

96.262

0.477
  cclA/cilC Streptococcus pneumoniae D39

49.515

96.262

0.477
  cclA/cilC Streptococcus pneumoniae R6

49.515

96.262

0.477
  cclA/cilC Streptococcus pneumoniae TIGR4

47.642

99.065

0.472
  cclA/cilC Streptococcus mitis NCTC 12261

45.755

99.065

0.453