Detailed information    

insolico Bioinformatically predicted

Overview

Name   ciaH   Type   Regulator
Locus tag   RMQ62_RS01650 Genome accession   NZ_CP135065
Coordinates   341682..343061 (-) Length   459 a.a.
NCBI ID   WP_105135003.1    Uniprot ID   -
Organism   Streptococcus suis strain ID24665     
Function   repress competence development; post-transcriptional repression of CSP production (predicted from homology)   
Competence regulation

Genomic Context

Location: 336682..348061
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RMQ62_RS01625 (RMQ62_01625) - 336888..338165 (-) 1278 WP_029188320.1 pyrimidine-nucleoside phosphorylase -
  RMQ62_RS01630 (RMQ62_01630) - 338162..338752 (-) 591 WP_024376492.1 class I SAM-dependent methyltransferase -
  RMQ62_RS01635 (RMQ62_01635) coaA 338861..339781 (+) 921 WP_313680854.1 type I pantothenate kinase -
  RMQ62_RS01640 (RMQ62_01640) rpsT 339840..340088 (+) 249 WP_012027069.1 30S ribosomal protein S20 -
  RMQ62_RS01645 (RMQ62_01645) - 340352..341581 (-) 1230 WP_105136222.1 transglutaminase domain-containing protein -
  RMQ62_RS01650 (RMQ62_01650) ciaH 341682..343061 (-) 1380 WP_105135003.1 cell wall metabolism sensor histidine kinase WalK Regulator
  RMQ62_RS01655 (RMQ62_01655) ciaR 343054..343725 (-) 672 WP_029186691.1 response regulator transcription factor Regulator
  RMQ62_RS01660 (RMQ62_01660) - 343917..344378 (-) 462 WP_105242436.1 hypothetical protein -
  RMQ62_RS01665 (RMQ62_01665) phoU 344544..345200 (-) 657 WP_002937611.1 phosphate signaling complex protein PhoU -
  RMQ62_RS01670 (RMQ62_01670) pstB 345229..345987 (-) 759 WP_002937614.1 phosphate ABC transporter ATP-binding protein PstB -
  RMQ62_RS01675 (RMQ62_01675) pstB 345999..346802 (-) 804 WP_002940866.1 phosphate ABC transporter ATP-binding protein PstB -
  RMQ62_RS01680 (RMQ62_01680) pstA 346827..347714 (-) 888 WP_014635996.1 phosphate ABC transporter permease PstA -

Sequence

Protein


Download         Length: 459 a.a.        Molecular weight: 51959.63 Da        Isoelectric Point: 6.1945

>NTDB_id=884707 RMQ62_RS01650 WP_105135003.1 341682..343061(-) (ciaH) [Streptococcus suis strain ID24665]
MPKRIRKLVYTDKFSFFIRYFAVFTLIFGLMTAIIFQLMRSTMYQNSDNTLKRIKEEPAMAVGFAIARTYEPNSVFILQD
SPTSEETTSSSSDSMPVPKDQKNTRDGDQLRLGVNTHVLLYSKSGEMVNPDTFTGLADLLLDKEKLGEIKEATVESSFGM
SEDYRYVTIELAIDELGYYSSYDIKYATILVNVSQIKSSIETYESTVAIVMVSAWLISILASIYLSNLSMRPILISYQKQ
KDFVENASHELRTPLAVLQNRLESLFRHPEATILESSESIGSSLEEVRNMRLLTTNLLNLARRDDGLKVDMIDVQPNYFD
EIFANYLMIAEENGKTLTVNNLIHQPIRTDKVLIKQLLTILFDNAMKYTDDDGRIQITANIKDKSVYFTVADNGLGISDA
DKKKIFDRFYRVDKARTRQKGGFGLGLSLAQQIIKTLGGKISVRDNQPKGTIFEVGLPK

Nucleotide


Download         Length: 1380 bp        

>NTDB_id=884707 RMQ62_RS01650 WP_105135003.1 341682..343061(-) (ciaH) [Streptococcus suis strain ID24665]
ATGCCTAAGCGAATCAGAAAATTAGTGTATACGGATAAATTTTCCTTCTTTATCCGTTATTTTGCAGTATTTACCCTGAT
TTTTGGCTTGATGACAGCTATTATTTTTCAATTAATGCGTTCAACTATGTATCAAAATTCCGATAATACCTTGAAACGGA
TTAAGGAAGAACCAGCGATGGCTGTTGGTTTTGCAATCGCAAGAACCTATGAGCCCAACTCTGTCTTTATACTTCAAGAT
AGCCCAACTAGTGAAGAAACGACGAGCTCTAGCTCAGATAGCATGCCTGTTCCTAAAGATCAAAAAAATACTAGAGATGG
AGATCAGCTGAGATTAGGTGTCAATACTCATGTCTTACTCTATAGTAAAAGTGGAGAAATGGTCAATCCGGATACTTTTA
CTGGTTTGGCCGACCTACTGTTAGATAAGGAAAAATTGGGTGAAATTAAGGAAGCAACGGTTGAATCAAGCTTCGGTATG
TCTGAAGATTATCGCTATGTGACGATTGAGCTGGCTATAGATGAACTAGGTTATTATTCGTCCTATGATATAAAATATGC
GACAATTTTAGTGAATGTCAGCCAGATAAAATCCTCCATTGAGACCTATGAATCGACAGTTGCTATTGTTATGGTATCAG
CTTGGCTTATTTCTATCTTGGCCAGTATTTACCTATCAAATCTTAGCATGCGTCCAATTCTAATCAGCTATCAAAAACAA
AAGGACTTTGTCGAAAATGCTAGTCATGAGTTGCGTACGCCGCTGGCTGTTCTCCAAAATCGTTTGGAGAGCCTGTTTCG
CCATCCCGAAGCGACGATTTTAGAGAGTAGTGAAAGCATCGGATCTAGTTTGGAAGAAGTCCGAAATATGCGATTATTGA
CAACGAACTTGCTCAATTTGGCTCGTCGTGATGATGGCTTAAAAGTCGATATGATCGATGTCCAACCGAACTATTTTGAT
GAAATCTTTGCTAATTACCTTATGATTGCCGAAGAAAATGGAAAAACACTAACAGTTAATAATTTGATTCATCAGCCGAT
TCGAACAGATAAGGTCCTGATTAAACAGTTGCTCACCATTTTATTTGACAATGCCATGAAGTATACCGACGATGATGGCA
GAATTCAAATTACAGCTAATATCAAGGATAAATCTGTCTACTTCACAGTTGCCGACAATGGTTTGGGAATCAGCGATGCC
GATAAGAAGAAAATCTTTGATCGCTTTTATCGAGTTGATAAGGCCAGAACACGTCAAAAAGGTGGTTTCGGTCTAGGATT
ATCGTTGGCTCAGCAAATTATTAAGACACTAGGTGGGAAAATCTCTGTTAGAGATAACCAACCGAAAGGAACTATTTTTG
AGGTAGGACTACCTAAATAA

Domains

Predicted by InterproScan.

Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase (HATPase_c)

(350-458)

His Kinase A (phospho-acceptor) domain (HisKA)

(240-306)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ciaH Streptococcus pneumoniae Rx1

49.676

100

0.501
  ciaH Streptococcus pneumoniae D39

49.676

100

0.501
  ciaH Streptococcus pneumoniae R6

49.676

100

0.501
  ciaH Streptococcus pneumoniae TIGR4

49.676

100

0.501
  ciaH Streptococcus mutans UA159

49.89

99.129

0.495