Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssbA   Type   Machinery gene
Locus tag   RMQ63_RS03720 Genome accession   NZ_CP135063
Coordinates   777520..778014 (-) Length   164 a.a.
NCBI ID   WP_015647334.1    Uniprot ID   A0A0Z8R9G9
Organism   Streptococcus suis strain ID32563     
Function   ssDNA binding (predicted from homology)   
DNA processing

Related MGE

Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.

Gene-MGE association summary

MGE type MGE coordinates Gene coordinates Relative position Distance (bp)
IScluster/Tn 774212..776891 777520..778014 flank 629


Gene organization within MGE regions


Location: 774212..778014
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RMQ63_RS03705 (RMQ63_03705) - 774212..775414 (+) 1203 WP_109371051.1 IS110 family transposase -
  RMQ63_RS03710 (RMQ63_03710) - 775635..776891 (+) 1257 WP_313681155.1 ISL3 family transposase -
  RMQ63_RS03715 (RMQ63_03715) rpsR 777248..777487 (-) 240 WP_002939250.1 30S ribosomal protein S18 -
  RMQ63_RS03720 (RMQ63_03720) ssbA 777520..778014 (-) 495 WP_015647334.1 single-stranded DNA-binding protein Machinery gene

Sequence

Protein


Download         Length: 164 a.a.        Molecular weight: 18132.89 Da        Isoelectric Point: 4.7294

>NTDB_id=884668 RMQ63_RS03720 WP_015647334.1 777520..778014(-) (ssbA) [Streptococcus suis strain ID32563]
MINNVVLVGRMTRDAELRYTPSNQAVATFTLAVNRNFKNQNGEREADFINVVIWRQQAENLANWAKKGALIGVTGRIQTR
SYDNQQGQRVYVTEVVAESFQLLESRTAREGQGGGYSAGNSFAGGNDYNSPYQAPAQSTPNFAREESPFGTSNPMDISDD
DLPF

Nucleotide


Download         Length: 495 bp        

>NTDB_id=884668 RMQ63_RS03720 WP_015647334.1 777520..778014(-) (ssbA) [Streptococcus suis strain ID32563]
ATGATTAATAATGTAGTATTGGTTGGTCGTATGACCCGTGATGCAGAACTTCGTTATACTCCGTCTAATCAAGCTGTTGC
GACTTTTACTTTGGCGGTTAACCGCAATTTTAAAAATCAAAACGGTGAGCGTGAAGCGGACTTTATCAACGTAGTCATTT
GGCGTCAACAAGCTGAGAATTTGGCGAATTGGGCTAAGAAAGGTGCTCTGATTGGTGTTACTGGTCGTATCCAGACTCGT
AGCTATGACAATCAGCAAGGGCAACGTGTCTACGTTACTGAGGTAGTTGCAGAAAGTTTCCAACTCTTGGAAAGCCGTAC
TGCCCGTGAAGGTCAAGGTGGAGGCTATTCAGCTGGCAACTCGTTTGCTGGAGGAAATGATTATAACTCACCTTATCAAG
CACCTGCACAATCTACACCAAACTTCGCTCGAGAAGAAAGTCCATTTGGAACAAGTAATCCAATGGACATATCAGACGAT
GACCTACCATTCTAG

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-103)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A0Z8R9G9

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssbA Bacillus subtilis subsp. subtilis str. 168

57.558

100

0.604
  ssb Latilactobacillus sakei subsp. sakei 23K

56.322

100

0.598
  ssb Glaesserella parasuis strain SC1401

32.105

100

0.372
  ssbB Streptococcus sobrinus strain NIDR 6715-7

55.046

66.463

0.366