Detailed information
Bioinformatically predicted
Overview
| Name | ssbA | Type | Machinery gene |
| Locus tag | Q9J89_RS09295 | Genome accession | NZ_CP135051 |
| Coordinates | 1918491..1919006 (+) | Length | 171 a.a. |
| NCBI ID | WP_002466536.1 | Uniprot ID | A0A2V3ZFL8 |
| Organism | Staphylococcus warneri strain TWSL_1 | ||
| Function | ssDNA binding (predicted from homology) DNA processing |
||
Related MGE
Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.
Gene-MGE association summary
| MGE type | MGE coordinates | Gene coordinates | Relative position | Distance (bp) |
|---|---|---|---|---|
| Prophage | 1916723..1931978 | 1918491..1919006 | within | 0 |
Gene organization within MGE regions
Location: 1916723..1931978
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| Q9J89_RS09280 | - | 1916723..1916914 (-) | 192 | WP_002451523.1 | hypothetical protein | - |
| Q9J89_RS09285 | - | 1916976..1917797 (-) | 822 | WP_002466546.1 | GH25 family lysozyme | - |
| Q9J89_RS09290 | rpsF | 1918173..1918469 (+) | 297 | WP_002451521.1 | 30S ribosomal protein S6 | - |
| Q9J89_RS09295 | ssbA | 1918491..1919006 (+) | 516 | WP_002466536.1 | single-stranded DNA-binding protein | Machinery gene |
| Q9J89_RS09300 | rpsR | 1919051..1919293 (+) | 243 | WP_002451519.1 | 30S ribosomal protein S18 | - |
| Q9J89_RS09305 | - | 1919388..1919903 (-) | 516 | WP_145541345.1 | hypothetical protein | - |
| Q9J89_RS09310 | - | 1920022..1921238 (-) | 1217 | Protein_1817 | tyrosine-type recombinase/integrase | - |
| Q9J89_RS09315 | - | 1921261..1922577 (-) | 1317 | WP_145541342.1 | DUF4041 domain-containing protein | - |
| Q9J89_RS09320 | - | 1922607..1923305 (-) | 699 | WP_119547746.1 | helix-turn-helix domain-containing protein | - |
| Q9J89_RS09325 | - | 1923450..1923662 (+) | 213 | WP_119547748.1 | helix-turn-helix transcriptional regulator | - |
| Q9J89_RS09330 | - | 1923663..1923935 (+) | 273 | WP_119547750.1 | helix-turn-helix domain-containing protein | - |
| Q9J89_RS09335 | - | 1923951..1924088 (+) | 138 | WP_000800860.1 | hypothetical protein | - |
| Q9J89_RS09340 | - | 1924090..1924302 (+) | 213 | Protein_1823 | chromosome partitioning protein ParB | - |
| Q9J89_RS09345 | - | 1924647..1924955 (+) | 309 | WP_119547754.1 | type II toxin-antitoxin system toxin TscT | - |
| Q9J89_RS09350 | - | 1925047..1925919 (+) | 873 | WP_119547756.1 | primase alpha helix C-terminal domain-containing protein | - |
| Q9J89_RS09355 | - | 1925934..1927643 (+) | 1710 | WP_119547758.1 | DUF927 domain-containing protein | - |
| Q9J89_RS09360 | - | 1927991..1928368 (+) | 378 | WP_107546743.1 | hypothetical protein | - |
| Q9J89_RS09365 | - | 1928370..1929011 (+) | 642 | WP_119547760.1 | pathogenicity island protein | - |
| Q9J89_RS09370 | - | 1929297..1929641 (+) | 345 | WP_119547762.1 | pathogenicity island protein | - |
| Q9J89_RS09375 | - | 1929653..1930414 (+) | 762 | WP_119547764.1 | hypothetical protein | - |
| Q9J89_RS09380 | - | 1930428..1931024 (+) | 597 | WP_145541340.1 | pathogenicity island protein | - |
| Q9J89_RS09385 | - | 1931017..1931319 (+) | 303 | WP_002467101.1 | hypothetical protein | - |
| Q9J89_RS09390 | - | 1931372..1931857 (+) | 486 | WP_119547768.1 | terminase small subunit | - |
| Q9J89_RS09395 | - | 1931841..1931978 (+) | 138 | WP_002467112.1 | hypothetical protein | - |
Sequence
Protein
Download Length: 171 a.a. Molecular weight: 18856.42 Da Isoelectric Point: 4.7410
>NTDB_id=884558 Q9J89_RS09295 WP_002466536.1 1918491..1919006(+) (ssbA) [Staphylococcus warneri strain TWSL_1]
MLNRVVLVGRLTKDPEYRTTPSGVSVATFTLAVNRTFTNAQGEREADFINCVVFRRQAENVNNYLSKGSLAGVDGRIQSR
SYENQEGRRIFVTEVVCDSVQFLEPKNSQNGGGQRSQNNEFQDYGQGFGGQQSGQNTSYNNNSSKPNSNQSDNPFANANG
PIDISDDDLPF
MLNRVVLVGRLTKDPEYRTTPSGVSVATFTLAVNRTFTNAQGEREADFINCVVFRRQAENVNNYLSKGSLAGVDGRIQSR
SYENQEGRRIFVTEVVCDSVQFLEPKNSQNGGGQRSQNNEFQDYGQGFGGQQSGQNTSYNNNSSKPNSNQSDNPFANANG
PIDISDDDLPF
Nucleotide
Download Length: 516 bp
>NTDB_id=884558 Q9J89_RS09295 WP_002466536.1 1918491..1919006(+) (ssbA) [Staphylococcus warneri strain TWSL_1]
ATGTTAAATAGAGTTGTATTAGTAGGTCGTTTAACGAAAGATCCAGAATACAGAACCACTCCCTCAGGCGTAAGTGTAGC
GACATTTACTCTAGCAGTTAATCGTACTTTCACGAATGCTCAAGGGGAACGCGAAGCAGATTTCATTAACTGTGTTGTTT
TCAGAAGACAAGCAGAAAATGTAAATAACTACTTATCTAAAGGTAGTTTAGCTGGCGTTGATGGTCGCATACAGTCACGT
AGTTATGAAAATCAAGAAGGTCGTCGTATCTTTGTTACTGAAGTCGTTTGTGACAGTGTTCAATTCCTTGAACCTAAGAA
TTCACAAAATGGCGGTGGCCAACGTTCACAAAACAACGAATTCCAAGACTATGGTCAAGGATTCGGTGGTCAACAATCAG
GACAAAATACTTCGTATAACAACAATTCATCAAAACCTAATTCAAATCAATCAGATAATCCATTTGCGAATGCGAACGGA
CCTATTGATATTAGTGATGATGATTTACCATTCTAA
ATGTTAAATAGAGTTGTATTAGTAGGTCGTTTAACGAAAGATCCAGAATACAGAACCACTCCCTCAGGCGTAAGTGTAGC
GACATTTACTCTAGCAGTTAATCGTACTTTCACGAATGCTCAAGGGGAACGCGAAGCAGATTTCATTAACTGTGTTGTTT
TCAGAAGACAAGCAGAAAATGTAAATAACTACTTATCTAAAGGTAGTTTAGCTGGCGTTGATGGTCGCATACAGTCACGT
AGTTATGAAAATCAAGAAGGTCGTCGTATCTTTGTTACTGAAGTCGTTTGTGACAGTGTTCAATTCCTTGAACCTAAGAA
TTCACAAAATGGCGGTGGCCAACGTTCACAAAACAACGAATTCCAAGACTATGGTCAAGGATTCGGTGGTCAACAATCAG
GACAAAATACTTCGTATAACAACAATTCATCAAAACCTAATTCAAATCAATCAGATAATCCATTTGCGAATGCGAACGGA
CCTATTGATATTAGTGATGATGATTTACCATTCTAA
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| ssbA | Bacillus subtilis subsp. subtilis str. 168 |
61.453 |
100 |
0.643 |
| ssb | Latilactobacillus sakei subsp. sakei 23K |
52.601 |
100 |
0.532 |
| ssb | Glaesserella parasuis strain SC1401 |
36.313 |
100 |
0.38 |
| ssbB | Bacillus subtilis subsp. subtilis str. 168 |
60.377 |
61.988 |
0.374 |