Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   RJX39_RS02005 Genome accession   NZ_CP135049
Coordinates   408801..409259 (-) Length   152 a.a.
NCBI ID   WP_343192566.1    Uniprot ID   -
Organism   Buchnera aphidicola (Taiwanaphis decaspermi) strain Taide29     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 403801..414259
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RJX39_RS01980 (RJX39_01980) deoD 404088..404798 (-) 711 WP_343192561.1 purine-nucleoside phosphorylase -
  RJX39_RS01985 (RJX39_01985) - 404860..406083 (-) 1224 WP_343192562.1 phosphopentomutase -
  RJX39_RS01990 (RJX39_01990) ansA 406303..407316 (+) 1014 WP_343192563.1 asparaginase -
  RJX39_RS01995 (RJX39_01995) - 407341..407922 (-) 582 WP_343192564.1 NfuA family Fe-S biogenesis protein -
  RJX39_RS02000 (RJX39_02000) - 408024..408797 (+) 774 WP_343192565.1 alpha/beta fold hydrolase -
  RJX39_RS02005 (RJX39_02005) ssb 408801..409259 (-) 459 WP_343192566.1 single-stranded DNA-binding protein Machinery gene
  RJX39_RS02010 (RJX39_02010) dusA 409371..410387 (+) 1017 WP_343192567.1 tRNA dihydrouridine(20/20a) synthase DusA -
  RJX39_RS02015 (RJX39_02015) dnaB 410477..411868 (+) 1392 WP_343192568.1 replicative DNA helicase -
  RJX39_RS02020 (RJX39_02020) gshB 411970..412941 (+) 972 WP_343192569.1 glutathione synthase -
  RJX39_RS02025 (RJX39_02025) ruvX 412968..413390 (+) 423 WP_343192570.1 Holliday junction resolvase RuvX -

Sequence

Protein


Download         Length: 152 a.a.        Molecular weight: 17337.48 Da        Isoelectric Point: 9.2890

>NTDB_id=884529 RJX39_RS02005 WP_343192566.1 408801..409259(-) (ssb) [Buchnera aphidicola (Taiwanaphis decaspermi) strain Taide29]
MSTRGINKVILIGNLGQDPDVRYMPNGKAVTNLTVATSENWKDKKTGERKEKTEWHKIVIFGKLAEIAGQYLKKGSQVYL
EGSLQTRKWQDQNGNDRYTTEIIINIGGTMQMLGSNRNNKSNFLNNNDQKNIVDNKIKEENSNIDFDDEIPF

Nucleotide


Download         Length: 459 bp        

>NTDB_id=884529 RJX39_RS02005 WP_343192566.1 408801..409259(-) (ssb) [Buchnera aphidicola (Taiwanaphis decaspermi) strain Taide29]
ATGTCTACAAGAGGAATAAATAAAGTAATATTAATTGGCAATTTAGGACAGGATCCAGATGTCAGGTATATGCCTAATGG
TAAAGCTGTTACTAATTTAACAGTAGCTACTTCAGAAAATTGGAAAGATAAAAAAACTGGTGAAAGAAAAGAAAAAACAG
AATGGCATAAAATAGTTATTTTTGGTAAGTTAGCTGAAATAGCTGGTCAATATTTAAAAAAAGGATCTCAAGTATATTTA
GAAGGATCTTTACAAACCAGAAAATGGCAAGATCAAAATGGAAACGATAGATATACAACAGAGATTATTATTAATATAGG
AGGAACAATGCAAATGTTAGGTAGCAATAGAAATAATAAATCTAATTTTTTAAATAATAATGATCAAAAAAATATTGTGG
ATAATAAAATCAAAGAAGAAAATTCTAATATAGATTTTGATGATGAAATTCCATTCTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(6-112)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

50.847

100

0.592
  ssb Glaesserella parasuis strain SC1401

64.754

80.263

0.52
  ssb Neisseria meningitidis MC58

58.772

75

0.441
  ssb Neisseria gonorrhoeae MS11

58.772

75

0.441