Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   RJX12_RS02210 Genome accession   NZ_CP135047
Coordinates   504778..505317 (-) Length   179 a.a.
NCBI ID   WP_343192127.1    Uniprot ID   -
Organism   Buchnera aphidicola (Formosaphis micheliae) strain Formi28     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 499778..510317
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RJX12_RS02195 (RJX12_02195) - 500678..502288 (-) 1611 WP_343192124.1 peptide chain release factor 3 -
  RJX12_RS02200 (RJX12_02200) - 503219..503794 (-) 576 WP_343192125.1 NifU family protein -
  RJX12_RS02205 (RJX12_02205) bioH 503938..504714 (+) 777 WP_343192126.1 pimeloyl-ACP methyl ester esterase BioH -
  RJX12_RS02210 (RJX12_02210) ssb 504778..505317 (-) 540 WP_343192127.1 single-stranded DNA-binding protein Machinery gene
  RJX12_RS02215 (RJX12_02215) dnaB 506004..507404 (+) 1401 WP_343192128.1 replicative DNA helicase -
  RJX12_RS02220 (RJX12_02220) gshB 507874..508839 (+) 966 WP_343192129.1 glutathione synthase -
  RJX12_RS02225 (RJX12_02225) ruvX 509009..509422 (+) 414 WP_343192130.1 Holliday junction resolvase RuvX -

Sequence

Protein


Download         Length: 179 a.a.        Molecular weight: 20370.82 Da        Isoelectric Point: 6.6457

>NTDB_id=884523 RJX12_RS02210 WP_343192127.1 504778..505317(-) (ssb) [Buchnera aphidicola (Formosaphis micheliae) strain Formi28]
MASRGINKVILVGNLGQDPEVRYMPNGSAVANITLATSETWKDKNTGIMKEKTEWHRVVLFGKLAEIAREYLRKGAQVYI
EGCLQTRKWKDQNGIDRYTTEIIVNISGTMHMLGHRNTSNVTTSNNDIQNNQNNLLEKNKLKNNNVINNDNILTPFHKND
ESIHEEASQVNFDDDDIPF

Nucleotide


Download         Length: 540 bp        

>NTDB_id=884523 RJX12_RS02210 WP_343192127.1 504778..505317(-) (ssb) [Buchnera aphidicola (Formosaphis micheliae) strain Formi28]
ATGGCAAGTAGAGGAATTAATAAAGTTATTCTTGTAGGTAATTTAGGACAAGATCCAGAAGTTCGTTATATGCCAAATGG
TAGCGCTGTAGCTAATATTACATTAGCAACTTCAGAAACATGGAAAGATAAAAATACTGGGATTATGAAGGAAAAAACGG
AATGGCATCGGGTAGTTTTATTCGGTAAATTAGCAGAAATTGCTAGAGAATATTTAAGAAAAGGTGCTCAAGTATATATT
GAAGGCTGTTTACAAACGAGAAAATGGAAAGATCAAAATGGTATCGATAGATATACTACAGAAATAATAGTAAACATTAG
TGGAACGATGCATATGTTAGGACATAGAAATACTAGTAATGTTACAACATCTAATAATGATATTCAAAATAATCAAAATA
ATTTATTAGAAAAAAATAAATTAAAGAATAATAATGTTATAAATAATGATAATATATTAACACCTTTTCATAAAAATGAT
GAATCTATTCATGAAGAAGCATCTCAAGTTAATTTTGATGATGATGACATACCTTTTTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(6-109)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

52.66

100

0.553
  ssb Glaesserella parasuis strain SC1401

47.253

100

0.48
  ssb Neisseria meningitidis MC58

40.556

100

0.408
  ssb Neisseria gonorrhoeae MS11

40.556

100

0.408