Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   RJV41_RS02460 Genome accession   NZ_CP135039
Coordinates   505996..506520 (-) Length   174 a.a.
NCBI ID   WP_343183025.1    Uniprot ID   -
Organism   Buchnera aphidicola (Neophyllaphis podocarpi) strain Neopo25     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 500996..511520
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RJV41_RS02435 (RJV41_02435) deoD 501111..501821 (-) 711 WP_343183021.1 purine-nucleoside phosphorylase -
  RJV41_RS02440 (RJV41_02440) - 501859..503088 (-) 1230 WP_343183329.1 phosphopentomutase -
  RJV41_RS02445 (RJV41_02445) ansA 503342..504364 (+) 1023 WP_343183022.1 asparaginase -
  RJV41_RS02450 (RJV41_02450) - 504435..505004 (-) 570 WP_343183023.1 NfuA family Fe-S biogenesis protein -
  RJV41_RS02455 (RJV41_02455) bioH 505116..505901 (+) 786 WP_343183024.1 pimeloyl-ACP methyl ester esterase BioH -
  RJV41_RS02460 (RJV41_02460) ssb 505996..506520 (-) 525 WP_343183025.1 single-stranded DNA-binding protein Machinery gene
  RJV41_RS02465 (RJV41_02465) dnaB 506709..508115 (+) 1407 WP_343183026.1 replicative DNA helicase -
  RJV41_RS02470 (RJV41_02470) gshB 508244..509209 (+) 966 WP_343183027.1 glutathione synthase -
  RJV41_RS02475 (RJV41_02475) ruvX 509216..509638 (+) 423 WP_343183028.1 Holliday junction resolvase RuvX -
  RJV41_RS02480 (RJV41_02480) - 509669..510358 (+) 690 WP_343183029.1 YggS family pyridoxal phosphate-dependent enzyme -
  RJV41_RS02485 (RJV41_02485) - 510394..510954 (+) 561 WP_343183030.1 YggT family protein -

Sequence

Protein


Download         Length: 174 a.a.        Molecular weight: 19452.64 Da        Isoelectric Point: 8.4121

>NTDB_id=884511 RJV41_RS02460 WP_343183025.1 505996..506520(-) (ssb) [Buchnera aphidicola (Neophyllaphis podocarpi) strain Neopo25]
MASRGINKVILIGNLGQDPEIRYMPNGGAVANITLATSDNWKDKNTGESKERTEWHRVVLFGKLAEIAGDYLRKGSQVYI
EGTLQTRKWQDQNGQDRYTTEVVVNINGTMQMLGNRNSGIFSNSNVLPSKSKNLSSSSNNKIINKNHKSSDLNLTENSFN
KNESPIDFEDDIPF

Nucleotide


Download         Length: 525 bp        

>NTDB_id=884511 RJV41_RS02460 WP_343183025.1 505996..506520(-) (ssb) [Buchnera aphidicola (Neophyllaphis podocarpi) strain Neopo25]
ATGGCAAGCAGAGGAATTAATAAAGTAATATTAATAGGTAATTTAGGTCAAGATCCTGAGATTCGTTACATGCCAAATGG
TGGTGCTGTCGCTAATATTACTTTAGCAACTTCTGATAATTGGAAAGATAAAAATACAGGTGAAAGTAAAGAAAGAACAG
AATGGCATCGTGTTGTTTTATTTGGTAAATTAGCTGAAATTGCTGGTGATTATTTACGTAAAGGTTCTCAAGTGTATATA
GAAGGTACTTTGCAAACTAGAAAATGGCAAGATCAGAATGGTCAAGATCGTTATACTACTGAGGTAGTTGTAAATATTAA
CGGTACTATGCAAATGCTAGGTAATCGTAATTCTGGAATTTTTAGTAATTCTAATGTTCTTCCATCAAAATCTAAAAACC
TAAGTTCTTCTTCTAATAATAAAATTATTAATAAAAATCACAAATCTTCTGATTTAAATTTAACTGAAAATTCTTTTAAT
AAAAATGAATCTCCAATAGATTTTGAGGATGATATACCATTTTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(6-112)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

60.894

100

0.626
  ssb Glaesserella parasuis strain SC1401

49.724

100

0.517
  ssb Neisseria meningitidis MC58

40.984

100

0.431
  ssb Neisseria gonorrhoeae MS11

41.667

100

0.431