Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   RJU59_RS02160 Genome accession   NZ_CP135033
Coordinates   462964..463509 (-) Length   181 a.a.
NCBI ID   WP_343155123.1    Uniprot ID   -
Organism   Buchnera aphidicola (Kurisakia onigurumii) strain Kuron23     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 457964..468509
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RJU59_RS02140 (RJU59_02140) - 458375..459601 (-) 1227 WP_343155119.1 phosphopentomutase -
  RJU59_RS02145 (RJU59_02145) - 459685..461292 (-) 1608 WP_343155120.1 peptide chain release factor 3 -
  RJU59_RS02150 (RJU59_02150) - 461395..461982 (-) 588 WP_343155121.1 NifU family protein -
  RJU59_RS02155 (RJU59_02155) - 462115..462870 (+) 756 WP_343155122.1 alpha/beta fold hydrolase -
  RJU59_RS02160 (RJU59_02160) ssb 462964..463509 (-) 546 WP_343155123.1 single-stranded DNA-binding protein Machinery gene
  RJU59_RS02165 (RJU59_02165) dusA 463776..464549 (+) 774 WP_343155124.1 tRNA dihydrouridine(20/20a) synthase DusA -
  RJU59_RS02170 (RJU59_02170) dnaB 464831..466252 (+) 1422 WP_343128568.1 replicative DNA helicase -
  RJU59_RS02175 (RJU59_02175) gshB 466332..467300 (+) 969 WP_343155125.1 glutathione synthase -
  RJU59_RS02180 (RJU59_02180) ruvX 467306..467722 (+) 417 WP_343128570.1 Holliday junction resolvase RuvX -

Sequence

Protein


Download         Length: 181 a.a.        Molecular weight: 20448.92 Da        Isoelectric Point: 9.6454

>NTDB_id=884504 RJU59_RS02160 WP_343155123.1 462964..463509(-) (ssb) [Buchnera aphidicola (Kurisakia onigurumii) strain Kuron23]
MASRGVNKAILIGHLGQDPEVRYMPNGGAVANINLATSDVWRDKNTGEMKEKTEWHRIVLFGKLAEIAGEYLKKGSQVYI
EGSIQTRKWQDQNGTERYTTEIIVNIGGTMQMLGTRNSNSSNYSSSIPVNKKDNKNIISDRNYKKNIINNNDLKKIDKYK
KDSIQSSDNNTSINFDDDIPF

Nucleotide


Download         Length: 546 bp        

>NTDB_id=884504 RJU59_RS02160 WP_343155123.1 462964..463509(-) (ssb) [Buchnera aphidicola (Kurisakia onigurumii) strain Kuron23]
ATGGCGAGCAGAGGAGTTAATAAAGCTATTTTGATAGGACATTTAGGACAAGATCCTGAAGTACGATATATGCCTAATGG
AGGTGCTGTAGCAAATATTAACTTAGCAACTTCAGATGTTTGGAGAGATAAAAATACTGGAGAGATGAAAGAAAAAACAG
AATGGCATAGAATTGTATTATTTGGAAAATTAGCTGAAATTGCTGGAGAATATTTAAAAAAAGGATCACAAGTATATATC
GAGGGATCTATTCAAACAAGAAAATGGCAAGATCAAAATGGAACAGAACGATATACTACGGAAATTATTGTAAATATTGG
AGGTACGATGCAAATGTTGGGTACTCGTAATTCTAATTCTTCTAATTATTCTTCTTCTATACCAGTAAATAAAAAAGATA
ACAAAAATATAATATCTGATAGAAATTATAAAAAAAATATTATTAATAATAATGATTTAAAAAAAATTGATAAATATAAA
AAAGATTCTATTCAATCTTCTGATAATAATACTTCAATAAATTTTGATGATGATATTCCTTTTTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(6-112)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

54.945

100

0.552
  ssb Glaesserella parasuis strain SC1401

47.541

100

0.481
  ssb Neisseria meningitidis MC58

42.697

98.343

0.42
  ssb Neisseria gonorrhoeae MS11

59.13

63.536

0.376