Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   RJT32_RS02740 Genome accession   NZ_CP135021
Coordinates   570424..570933 (-) Length   169 a.a.
NCBI ID   WP_343154206.1    Uniprot ID   A0AAU6W679
Organism   Buchnera aphidicola (Aphis aurantii) strain Aphau14     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 565424..575933
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RJT32_RS02725 (RJT32_02725) - 566269..567855 (-) 1587 WP_343154203.1 peptide chain release factor 3 -
  RJT32_RS02730 (RJT32_02730) - 568898..569473 (-) 576 WP_343154204.1 NfuA family Fe-S biogenesis protein -
  RJT32_RS02735 (RJT32_02735) bioH 569596..570369 (+) 774 WP_343154205.1 pimeloyl-ACP methyl ester esterase BioH -
  RJT32_RS02740 (RJT32_02740) ssb 570424..570933 (-) 510 WP_343154206.1 single-stranded DNA-binding protein Machinery gene
  RJT32_RS02745 (RJT32_02745) dnaB 571700..573079 (+) 1380 WP_343154207.1 replicative DNA helicase -
  RJT32_RS02750 (RJT32_02750) gshB 573208..574161 (+) 954 WP_343154541.1 glutathione synthase -
  RJT32_RS02755 (RJT32_02755) ruvX 574164..574571 (+) 408 WP_343154542.1 Holliday junction resolvase RuvX -
  RJT32_RS02760 (RJT32_02760) - 574603..575280 (+) 678 WP_343154208.1 YggS family pyridoxal phosphate-dependent enzyme -

Sequence

Protein


Download         Length: 169 a.a.        Molecular weight: 19051.44 Da        Isoelectric Point: 6.4930

>NTDB_id=884485 RJT32_RS02740 WP_343154206.1 570424..570933(-) (ssb) [Buchnera aphidicola (Aphis aurantii) strain Aphau14]
MASRGVNKVILIGHLGQDPEVRYMPNGNAVVNMTLATSENWKDKTTGETKEKTEWHRVVLFGKLAEIAGEYLRKGSQVYI
EGSLQTRKWQDQNGLERYTTEVIVNIGGTMQMLGNRSSNTPNSPINENNSILKAKELANTITSKNTEKYKLKKEQVDSSE
IDFDDEIPF

Nucleotide


Download         Length: 510 bp        

>NTDB_id=884485 RJT32_RS02740 WP_343154206.1 570424..570933(-) (ssb) [Buchnera aphidicola (Aphis aurantii) strain Aphau14]
ATGGCAAGCAGAGGTGTAAATAAAGTAATTTTAATTGGTCATTTAGGTCAGGATCCAGAAGTTCGATATATGCCTAATGG
TAATGCAGTCGTGAATATGACACTTGCAACTTCAGAAAATTGGAAAGATAAAACTACAGGTGAAACTAAAGAAAAAACAG
AATGGCATAGAGTGGTTTTATTCGGAAAATTAGCAGAAATAGCGGGAGAGTATTTACGAAAAGGTTCTCAGGTTTATATT
GAAGGTTCGCTTCAAACAAGAAAATGGCAAGACCAAAATGGTCTTGAACGATATACTACAGAAGTTATAGTTAATATTGG
CGGAACCATGCAAATGCTTGGAAATCGAAGTTCTAATACTCCTAATTCTCCAATAAATGAAAATAATAGTATTTTAAAAG
CAAAAGAATTAGCTAATACTATTACTTCCAAAAATACAGAAAAATATAAATTAAAAAAAGAACAAGTTGATTCTTCAGAA
ATAGATTTTGATGATGAAATTCCATTTTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(6-112)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

58.192

100

0.609
  ssb Glaesserella parasuis strain SC1401

46.961

100

0.503
  ssb Neisseria gonorrhoeae MS11

42.614

100

0.444
  ssb Neisseria meningitidis MC58

42.614

100

0.444