Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   RJT30_RS01855 Genome accession   NZ_CP135015
Coordinates   379250..379756 (-) Length   168 a.a.
NCBI ID   WP_343190281.1    Uniprot ID   -
Organism   Buchnera aphidicola (Mollitrichosiphum nigrofasciatum) strain Molni12     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 374250..384756
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RJT30_RS01825 (RJT30_01825) aroB 374437..375516 (-) 1080 WP_343190276.1 3-dehydroquinate synthase -
  RJT30_RS01830 (RJT30_01830) aroK 375553..376077 (-) 525 WP_343190277.1 shikimate kinase AroK -
  RJT30_RS01840 (RJT30_01840) deoD 376499..377206 (-) 708 WP_343190278.1 purine-nucleoside phosphorylase -
  RJT30_RS01845 (RJT30_01845) - 377246..378484 (-) 1239 WP_343190279.1 phosphopentomutase -
  RJT30_RS01850 (RJT30_01850) - 378533..379117 (-) 585 WP_343190280.1 NifU family protein -
  RJT30_RS01855 (RJT30_01855) ssb 379250..379756 (-) 507 WP_343190281.1 single-stranded DNA-binding protein Machinery gene
  RJT30_RS01860 (RJT30_01860) dnaB 380104..381498 (+) 1395 WP_343190282.1 replicative DNA helicase -
  RJT30_RS01865 (RJT30_01865) gshB 381614..382567 (+) 954 WP_343190283.1 glutathione synthase -
  RJT30_RS01870 (RJT30_01870) ruvX 382624..383028 (+) 405 WP_343190284.1 Holliday junction resolvase RuvX -
  RJT30_RS01875 (RJT30_01875) hemW 383091..384218 (+) 1128 WP_343190285.1 radical SAM family heme chaperone HemW -

Sequence

Protein


Download         Length: 168 a.a.        Molecular weight: 19104.59 Da        Isoelectric Point: 7.3174

>NTDB_id=884477 RJT30_RS01855 WP_343190281.1 379250..379756(-) (ssb) [Buchnera aphidicola (Mollitrichosiphum nigrofasciatum) strain Molni12]
MASRGINKVILIGNLGQDPEVRYMPNGNAVVNIALATSDTWKDKNTGEMKEKTEWHRIVLFGKIAEIAGEYLKKGSQIYI
EGSLHTRKWKDQNDIDRYTTEVIVNIGGTMQMLGNRHSNINSSTLSKSNSNEDIDKINKIFTKKSKKESLKENKNNILDE
EFDEDIPF

Nucleotide


Download         Length: 507 bp        

>NTDB_id=884477 RJT30_RS01855 WP_343190281.1 379250..379756(-) (ssb) [Buchnera aphidicola (Mollitrichosiphum nigrofasciatum) strain Molni12]
ATGGCTAGTAGAGGAATAAATAAAGTTATATTAATTGGTAATCTTGGTCAAGACCCGGAAGTGCGTTATATGCCTAATGG
GAATGCTGTGGTAAACATTGCTTTAGCAACTTCAGATACATGGAAAGATAAAAATACTGGTGAAATGAAAGAAAAAACTG
AATGGCATCGTATTGTTTTATTTGGAAAAATTGCAGAAATTGCTGGAGAATATTTAAAAAAAGGTTCGCAAATATACATA
GAAGGTTCGTTACATACTCGTAAATGGAAAGATCAAAATGATATTGATAGATATACTACTGAAGTAATAGTTAATATTGG
TGGAACTATGCAAATGTTAGGAAATAGACATTCTAATATTAATTCTTCTACATTAAGTAAATCTAATTCTAATGAAGATA
TAGATAAAATTAATAAAATATTTACTAAAAAAAGTAAAAAAGAATCTTTAAAGGAAAATAAAAATAATATTTTAGATGAA
GAATTTGATGAAGATATACCTTTTTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(6-112)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

54.237

100

0.571
  ssb Glaesserella parasuis strain SC1401

44.022

100

0.482
  ssb Neisseria meningitidis MC58

39.773

100

0.417
  ssb Neisseria gonorrhoeae MS11

39.773

100

0.417