Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   RJT27_RS01825 Genome accession   NZ_CP135012
Coordinates   360633..361115 (-) Length   160 a.a.
NCBI ID   WP_343189426.1    Uniprot ID   -
Organism   Buchnera aphidicola (Greenidea ficicola) strain Grefi11     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 355633..366115
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RJT27_RS01795 (RJT27_01795) aroB 355987..357069 (-) 1083 WP_343189421.1 3-dehydroquinate synthase -
  RJT27_RS01800 (RJT27_01800) aroK 357075..357620 (-) 546 WP_343189422.1 shikimate kinase AroK -
  RJT27_RS01810 (RJT27_01810) deoD 358008..358709 (-) 702 WP_343189423.1 purine-nucleoside phosphorylase -
  RJT27_RS01815 (RJT27_01815) - 358751..359986 (-) 1236 WP_343189424.1 phosphopentomutase -
  RJT27_RS01820 (RJT27_01820) - 360007..360591 (-) 585 WP_343189425.1 NifU family protein -
  RJT27_RS01825 (RJT27_01825) ssb 360633..361115 (-) 483 WP_343189426.1 single-stranded DNA-binding protein Machinery gene
  RJT27_RS01830 (RJT27_01830) dnaB 361299..362690 (+) 1392 WP_343189427.1 replicative DNA helicase -
  RJT27_RS01835 (RJT27_01835) gshB 362780..363754 (+) 975 WP_343189428.1 glutathione synthase -
  RJT27_RS01840 (RJT27_01840) ruvX 363735..364151 (+) 417 WP_343189429.1 Holliday junction resolvase RuvX -
  RJT27_RS01845 (RJT27_01845) hemW 364169..365296 (+) 1128 WP_343189430.1 radical SAM family heme chaperone HemW -
  RJT27_RS01850 (RJT27_01850) - 365332..366018 (+) 687 Protein_340 A/G-specific adenine glycosylase -

Sequence

Protein


Download         Length: 160 a.a.        Molecular weight: 18316.86 Da        Isoelectric Point: 10.2486

>NTDB_id=884471 RJT27_RS01825 WP_343189426.1 360633..361115(-) (ssb) [Buchnera aphidicola (Greenidea ficicola) strain Grefi11]
MASKGINKVILIGNLGQDPEIRYMSNGNAIVNISLATSDTWRDKNTGEMKEKTEWHRVVLFGKLAEIASDYLKKGSQVYI
EGSLQTRKWKDQNGIDRYTTEVVVNIGGTMQMLGNKNSNSSLNLSQSRKNKKNKKKYHVKKKKNKEKNFLDEEFDEDIPF

Nucleotide


Download         Length: 483 bp        

>NTDB_id=884471 RJT27_RS01825 WP_343189426.1 360633..361115(-) (ssb) [Buchnera aphidicola (Greenidea ficicola) strain Grefi11]
ATGGCTAGTAAAGGTATTAATAAAGTTATTTTAATTGGAAATTTAGGTCAAGATCCAGAAATTCGTTATATGTCTAATGG
TAATGCTATAGTGAATATTTCTTTAGCGACTTCAGATACATGGAGAGATAAAAATACTGGAGAAATGAAAGAAAAAACAG
AATGGCATCGTGTTGTATTATTTGGTAAATTAGCTGAAATAGCGAGTGATTATTTAAAAAAAGGTTCGCAAGTATATATT
GAAGGTTCTTTACAAACAAGAAAGTGGAAAGATCAAAATGGAATAGATAGATATACTACAGAAGTAGTAGTGAATATTGG
AGGAACTATGCAAATGTTAGGTAATAAAAATTCTAATAGTTCTTTAAATTTATCACAATCTCGTAAAAATAAAAAAAATA
AAAAAAAATATCATGTAAAAAAAAAAAAAAATAAAGAAAAAAATTTTTTAGATGAAGAATTTGATGAAGATATTCCTTTT
TAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(6-112)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

54.237

100

0.6
  ssb Glaesserella parasuis strain SC1401

41.989

100

0.475
  ssb Neisseria gonorrhoeae MS11

40.909

100

0.45
  ssb Neisseria meningitidis MC58

40.909

100

0.45