Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   RJK19_RS01880 Genome accession   NZ_CP134994
Coordinates   378832..379356 (-) Length   174 a.a.
NCBI ID   WP_343184008.1    Uniprot ID   -
Organism   Buchnera aphidicola (Ceratovacuna keduensis) strain Cerke05     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 373832..384356
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RJK19_RS01850 (RJK19_01850) rpe 374583..375257 (-) 675 WP_343184003.1 ribulose-phosphate 3-epimerase -
  RJK19_RS01855 (RJK19_01855) aroB 375292..376380 (-) 1089 WP_343184004.1 3-dehydroquinate synthase -
  RJK19_RS01860 (RJK19_01860) aroK 376416..376949 (-) 534 WP_343184005.1 shikimate kinase AroK -
  RJK19_RS01870 (RJK19_01870) - 377382..377672 (-) 291 WP_343184006.1 NifU family protein -
  RJK19_RS01875 (RJK19_01875) - 378035..378760 (+) 726 WP_343184007.1 hypothetical protein -
  RJK19_RS01880 (RJK19_01880) ssb 378832..379356 (-) 525 WP_343184008.1 single-stranded DNA-binding protein Machinery gene
  RJK19_RS01885 (RJK19_01885) dusA 379514..380518 (+) 1005 WP_343184009.1 tRNA dihydrouridine(20/20a) synthase DusA -
  RJK19_RS01890 (RJK19_01890) dnaB 380593..381987 (+) 1395 WP_343184010.1 replicative DNA helicase -
  RJK19_RS01895 (RJK19_01895) gshB 382104..383066 (+) 963 WP_343184011.1 glutathione synthase -
  RJK19_RS01900 (RJK19_01900) - 383097..383657 (+) 561 WP_343184216.1 YqgE/AlgH family protein -
  RJK19_RS01905 (RJK19_01905) ruvX 383659..384084 (+) 426 WP_343184012.1 Holliday junction resolvase RuvX -

Sequence

Protein


Download         Length: 174 a.a.        Molecular weight: 19971.44 Da        Isoelectric Point: 8.3519

>NTDB_id=884440 RJK19_RS01880 WP_343184008.1 378832..379356(-) (ssb) [Buchnera aphidicola (Ceratovacuna keduensis) strain Cerke05]
MASRGINKVILIGHLGQDPEVRYMTNGIAVANMNIATSETWKDKNTGEIREKTEWHRIVLFNKLAEIAREYLRKGSQVYI
EGSLQTRKWQDQNNIDRYTTEVVVNIGGTMQMLGTRNNNSTNISKKEKSNSKNIDSNKQKILKKDNIKEDEGYSKKDILL
NESSDSEFDDEIPF

Nucleotide


Download         Length: 525 bp        

>NTDB_id=884440 RJK19_RS01880 WP_343184008.1 378832..379356(-) (ssb) [Buchnera aphidicola (Ceratovacuna keduensis) strain Cerke05]
ATGGCTAGTAGGGGAATAAATAAGGTAATATTAATAGGTCATTTAGGTCAAGATCCTGAAGTAAGATATATGACTAATGG
AATAGCAGTAGCTAATATGAACATTGCAACTTCTGAAACATGGAAAGATAAAAATACTGGAGAGATAAGAGAAAAAACAG
AATGGCATAGAATTGTTCTGTTTAATAAGTTAGCTGAAATAGCAAGAGAATATCTAAGAAAAGGATCTCAAGTTTATATA
GAAGGTTCTTTACAAACTAGAAAATGGCAAGATCAAAATAATATAGATAGATATACTACTGAAGTTGTTGTAAATATAGG
AGGAACTATGCAAATGTTAGGTACTAGAAACAATAATTCTACTAATATTTCAAAAAAAGAAAAATCCAATTCTAAAAATA
TAGATTCTAATAAACAAAAAATTTTAAAAAAAGATAATATAAAAGAAGATGAAGGTTATTCTAAAAAAGATATTTTGTTA
AATGAAAGTAGTGATTCAGAATTTGATGATGAAATTCCTTTTTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(6-112)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

56.593

100

0.592
  ssb Glaesserella parasuis strain SC1401

45.604

100

0.477
  ssb Neisseria meningitidis MC58

42.045

100

0.425
  ssb Neisseria gonorrhoeae MS11

41.477

100

0.42