Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   RJD44_RS01885 Genome accession   NZ_CP134985
Coordinates   376988..377512 (-) Length   174 a.a.
NCBI ID   WP_343189917.1    Uniprot ID   -
Organism   Buchnera aphidicola (Astegopteryx bambusae) strain Astba02     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 371988..382512
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RJD44_RS01855 (RJD44_01855) rpe 372711..373385 (-) 675 WP_343189912.1 ribulose-phosphate 3-epimerase -
  RJD44_RS01860 (RJD44_01860) aroB 373422..374510 (-) 1089 WP_343189913.1 3-dehydroquinate synthase -
  RJD44_RS01865 (RJD44_01865) aroK 374546..375079 (-) 534 WP_343189914.1 shikimate kinase AroK -
  RJD44_RS01875 (RJD44_01875) - 375557..376009 (-) 453 WP_343189915.1 NifU family protein -
  RJD44_RS01880 (RJD44_01880) - 376184..376918 (+) 735 WP_343189916.1 hypothetical protein -
  RJD44_RS01885 (RJD44_01885) ssb 376988..377512 (-) 525 WP_343189917.1 single-stranded DNA-binding protein Machinery gene
  RJD44_RS01890 (RJD44_01890) dusA 377655..378656 (+) 1002 WP_343189918.1 tRNA dihydrouridine(20/20a) synthase DusA -
  RJD44_RS01895 (RJD44_01895) dnaB 378735..380129 (+) 1395 WP_343189919.1 replicative DNA helicase -
  RJD44_RS01900 (RJD44_01900) gshB 380243..381208 (+) 966 WP_343189920.1 glutathione synthase -
  RJD44_RS01905 (RJD44_01905) - 381247..381807 (+) 561 WP_343190123.1 YqgE/AlgH family protein -
  RJD44_RS01910 (RJD44_01910) ruvX 381810..382220 (+) 411 WP_343189921.1 Holliday junction resolvase RuvX -

Sequence

Protein


Download         Length: 174 a.a.        Molecular weight: 20049.53 Da        Isoelectric Point: 9.2085

>NTDB_id=884427 RJD44_RS01885 WP_343189917.1 376988..377512(-) (ssb) [Buchnera aphidicola (Astegopteryx bambusae) strain Astba02]
MASRGINKVILIGHLGQDPEVRYMTNGIAVANMNIATSETWKDKNTGETREKTEWHRIVLFNKLAEIAREYLRKGSQVYI
EGSLQTRKWQDQNNMDRYTTEVVVNIGGTMKMLGNRNNNFSNNINDKNSVSKNLETSKKNVLEKDKIKKNDSYSKKDILS
NEINESEFDDEIPF

Nucleotide


Download         Length: 525 bp        

>NTDB_id=884427 RJD44_RS01885 WP_343189917.1 376988..377512(-) (ssb) [Buchnera aphidicola (Astegopteryx bambusae) strain Astba02]
ATGGCTAGTAGAGGAATTAATAAAGTAATATTAATAGGTCATTTAGGTCAAGATCCTGAAGTAAGATATATGACTAATGG
AATAGCTGTAGCTAATATGAATATTGCTACTTCTGAAACTTGGAAAGATAAAAATACTGGAGAAACTAGAGAAAAAACAG
AATGGCATAGAATTGTTTTGTTTAATAAGTTGGCTGAAATTGCTAGAGAATATTTGAGAAAAGGATCTCAAGTATATATA
GAGGGTTCTTTACAAACTAGAAAATGGCAGGATCAGAATAATATGGACAGATATACAACTGAAGTAGTTGTAAATATCGG
TGGAACTATGAAAATGCTTGGTAATAGAAATAATAATTTTTCTAATAATATTAATGATAAAAATAGTGTTTCTAAAAATT
TAGAAACTTCTAAAAAGAATGTTTTAGAAAAAGATAAAATTAAAAAAAATGATAGTTATTCTAAAAAAGATATTTTGTCA
AATGAAATTAATGAATCAGAATTTGATGATGAAATTCCTTTTTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(6-111)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

54.802

100

0.557
  ssb Glaesserella parasuis strain SC1401

44.262

100

0.466
  ssb Neisseria gonorrhoeae MS11

40.909

100

0.414
  ssb Neisseria meningitidis MC58

40.341

100

0.408