Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   RJD23_RS01910 Genome accession   NZ_CP134982
Coordinates   389604..390134 (-) Length   176 a.a.
NCBI ID   WP_343188185.1    Uniprot ID   -
Organism   Buchnera aphidicola (Ceratoglyphina bambusae) strain Cerba01     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 384604..395134
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RJD23_RS01880 (RJD23_01880) trpS 384879..385886 (-) 1008 WP_343188180.1 tryptophan--tRNA ligase -
  RJD23_RS01885 (RJD23_01885) rpe 385945..386628 (-) 684 WP_343188181.1 ribulose-phosphate 3-epimerase -
  RJD23_RS01890 (RJD23_01890) aroB 386660..387748 (-) 1089 WP_343188182.1 3-dehydroquinate synthase -
  RJD23_RS01895 (RJD23_01895) aroK 387790..388323 (-) 534 WP_343188183.1 shikimate kinase AroK -
  RJD23_RS01905 (RJD23_01905) - 388893..389216 (-) 324 WP_343188184.1 NifU family protein -
  RJD23_RS01910 (RJD23_01910) ssb 389604..390134 (-) 531 WP_343188185.1 single-stranded DNA-binding protein Machinery gene
  RJD23_RS01915 (RJD23_01915) dusA 390321..391292 (+) 972 WP_343188186.1 tRNA dihydrouridine(20/20a) synthase DusA -
  RJD23_RS01920 (RJD23_01920) dnaB 391406..392800 (+) 1395 WP_343188187.1 replicative DNA helicase -
  RJD23_RS01925 (RJD23_01925) gshB 392907..393866 (+) 960 WP_343188188.1 glutathione synthase -
  RJD23_RS01930 (RJD23_01930) - 393890..394456 (+) 567 WP_343188189.1 YqgE/AlgH family protein -
  RJD23_RS01935 (RJD23_01935) ruvX 394460..394867 (+) 408 WP_343188190.1 Holliday junction resolvase RuvX -

Sequence

Protein


Download         Length: 176 a.a.        Molecular weight: 20168.58 Da        Isoelectric Point: 6.0118

>NTDB_id=884422 RJD23_RS01910 WP_343188185.1 389604..390134(-) (ssb) [Buchnera aphidicola (Ceratoglyphina bambusae) strain Cerba01]
MASKGVNKVILIGNLGQDPEVRYMTNGIAVANMNIATSETWKDKNTGEIREKTEWHKIVLFNKLAEIAREYLRKGSQVYI
EGSLQTRKWQDQNNIDRYTTEVVVNIGGTMQMLGNRNSNSAVSSNFNNKDNDNIEKDKSIIKNNFNKKIDEKKVYSKKDI
LENENSEAEFDDDIPF

Nucleotide


Download         Length: 531 bp        

>NTDB_id=884422 RJD23_RS01910 WP_343188185.1 389604..390134(-) (ssb) [Buchnera aphidicola (Ceratoglyphina bambusae) strain Cerba01]
ATGGCTAGTAAAGGAGTTAATAAAGTAATATTAATAGGTAATTTAGGCCAAGATCCTGAAGTAAGATATATGACTAATGG
TATAGCTGTAGCAAATATGAATATAGCAACTTCTGAGACATGGAAAGATAAAAATACTGGTGAAATTAGAGAAAAAACAG
AATGGCATAAAATTGTATTATTTAATAAATTAGCTGAAATTGCTAGAGAATATTTAAGAAAAGGGTCTCAAGTTTATATA
GAAGGATCATTGCAAACAAGAAAATGGCAAGATCAAAATAATATAGATCGTTATACAACAGAAGTAGTAGTTAATATTGG
TGGAACCATGCAAATGTTGGGTAACAGAAATAGTAATTCTGCAGTTTCATCTAATTTTAATAATAAAGATAATGATAATA
TTGAAAAAGATAAGTCTATAATAAAAAATAATTTTAATAAAAAAATAGATGAAAAAAAAGTTTATTCTAAAAAAGATATT
TTAGAAAATGAAAATAGTGAAGCAGAATTTGACGATGATATTCCATTTTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(6-112)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

55.556

100

0.568
  ssb Glaesserella parasuis strain SC1401

48.619

100

0.5
  ssb Neisseria gonorrhoeae MS11

42.373

100

0.426
  ssb Neisseria meningitidis MC58

42.373

100

0.426