Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   RJT69_RS01990 Genome accession   NZ_CP134980
Coordinates   413234..413734 (-) Length   166 a.a.
NCBI ID   WP_343183510.1    Uniprot ID   -
Organism   Buchnera aphidicola (Periphyllus koelreuteriae) strain Perko21     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 408234..418734
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RJT69_RS01970 (RJT69_01970) - 408738..410336 (-) 1599 WP_343183507.1 peptide chain release factor 3 -
  RJT69_RS01975 (RJT69_01975) ansA 410548..411570 (+) 1023 WP_343183743.1 asparaginase -
  RJT69_RS01980 (RJT69_01980) - 411635..412210 (-) 576 WP_343183508.1 NifU family protein -
  RJT69_RS01985 (RJT69_01985) - 412376..413125 (+) 750 WP_343183509.1 alpha/beta fold hydrolase -
  RJT69_RS01990 (RJT69_01990) ssb 413234..413734 (-) 501 WP_343183510.1 single-stranded DNA-binding protein Machinery gene
  RJT69_RS01995 (RJT69_01995) dusA 413853..414827 (+) 975 WP_343183511.1 tRNA dihydrouridine(20/20a) synthase DusA -
  RJT69_RS02000 (RJT69_02000) dnaB 414864..416270 (+) 1407 WP_343183512.1 replicative DNA helicase -
  RJT69_RS02005 (RJT69_02005) - 416418..416993 (+) 576 WP_343183513.1 YqgE/AlgH family protein -
  RJT69_RS02010 (RJT69_02010) ruvX 416995..417408 (+) 414 WP_343183514.1 Holliday junction resolvase RuvX -
  RJT69_RS02015 (RJT69_02015) - 417383..418093 (+) 711 WP_343183515.1 YggS family pyridoxal phosphate-dependent enzyme -

Sequence

Protein


Download         Length: 166 a.a.        Molecular weight: 19015.57 Da        Isoelectric Point: 9.8752

>NTDB_id=884417 RJT69_RS01990 WP_343183510.1 413234..413734(-) (ssb) [Buchnera aphidicola (Periphyllus koelreuteriae) strain Perko21]
MASRGVNKVILIGYLGQDPDIRYMTNGAAVANINIATSENWKDKNTGETKEKTEWHKVVLFGKLAEITGEYLKKGSQVYI
EGSLKTRKWIDKNNLERYVTEIVVNINGSMQMLGNRQNFNNFKNNKENILNQSNLKKNKKNKILKNSNTESLLNESNIDF
EDEIPF

Nucleotide


Download         Length: 501 bp        

>NTDB_id=884417 RJT69_RS01990 WP_343183510.1 413234..413734(-) (ssb) [Buchnera aphidicola (Periphyllus koelreuteriae) strain Perko21]
ATGGCTAGTAGAGGAGTAAATAAAGTTATTTTGATAGGATATCTTGGTCAAGATCCAGATATTAGATATATGACTAATGG
TGCAGCAGTTGCAAATATTAATATTGCTACGTCTGAGAATTGGAAAGATAAAAATACAGGAGAAACAAAAGAAAAAACAG
AATGGCATAAAGTGGTTTTATTTGGAAAATTAGCTGAAATTACTGGAGAATATTTAAAAAAAGGATCTCAAGTATATATA
GAGGGTTCTTTAAAAACAAGAAAATGGATAGATAAAAATAATTTAGAAAGATATGTAACAGAAATTGTTGTAAATATTAA
TGGATCGATGCAAATGTTAGGAAATAGACAAAATTTTAATAATTTTAAAAATAATAAAGAAAATATTTTAAATCAATCAA
ATTTAAAAAAAAATAAAAAAAATAAAATATTAAAAAATTCTAATACAGAATCTTTATTAAATGAATCTAATATTGATTTT
GAAGATGAAATTCCTTTTTAG

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(6-112)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

55.367

100

0.59
  ssb Neisseria meningitidis MC58

41.243

100

0.44
  ssb Glaesserella parasuis strain SC1401

52.239

80.723

0.422
  ssb Neisseria gonorrhoeae MS11

39.205

100

0.416