Detailed information    

insolico Bioinformatically predicted

Overview

Name   tfoX   Type   Regulator
Locus tag   ViNHUV68_RS08735 Genome accession   NZ_CP134975
Coordinates   1916307..1916894 (-) Length   195 a.a.
NCBI ID   WP_391087433.1    Uniprot ID   -
Organism   Vibrio sp. NH-UV-68     
Function   positive regulator of competence gene (predicted from homology)   
Competence regulation

Genomic Context

Location: 1911307..1921894
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ViNHUV68_RS08715 (ViNHUV68_17580) - 1911588..1912853 (-) 1266 WP_391087424.1 DUF945 family protein -
  ViNHUV68_RS08720 (ViNHUV68_17590) - 1913028..1914980 (+) 1953 WP_391087427.1 ATP-binding protein -
  ViNHUV68_RS08725 (ViNHUV68_17600) - 1914977..1915474 (+) 498 WP_391087430.1 response regulator -
  ViNHUV68_RS08730 (ViNHUV68_17610) - 1915640..1916206 (+) 567 WP_038172657.1 hypothetical protein -
  ViNHUV68_RS08735 (ViNHUV68_17620) tfoX 1916307..1916894 (-) 588 WP_391087433.1 TfoX/Sxy family DNA transformation protein Regulator
  ViNHUV68_RS08740 (ViNHUV68_17630) - 1917250..1918170 (+) 921 WP_391087436.1 HDOD domain-containing protein -
  ViNHUV68_RS08745 (ViNHUV68_17640) - 1918190..1919095 (+) 906 WP_391087438.1 LysO family transporter -
  ViNHUV68_RS08750 (ViNHUV68_17650) - 1919211..1919723 (+) 513 WP_391087441.1 hypothetical protein -
  ViNHUV68_RS08755 (ViNHUV68_17660) panP 1919854..1921512 (+) 1659 WP_391087444.1 pyridoxal-dependent aspartate 1-decarboxylase PanP -

Sequence

Protein


Download         Length: 195 a.a.        Molecular weight: 22605.96 Da        Isoelectric Point: 9.4445

>NTDB_id=884386 ViNHUV68_RS08735 WP_391087433.1 1916307..1916894(-) (tfoX) [Vibrio sp. NH-UV-68]
MDMTEQKFIQYVKKFGDFQKRSMFGGTGLFKEEAMFALISNDHVFIRGGEKLDNELSQLGCEKYRHVKKQTTATVNYYDV
TTLFVTNDSKIARLVEESITYSVSEREYKRSYANRRLRDLPNMQLTLERMVKKAGIEDVDTFVELGPSAVFSRVKQAYGS
DVDVKLLWKFAGAIEGIHWKLIQEPRKRQLLANCH

Nucleotide


Download         Length: 588 bp        

>NTDB_id=884386 ViNHUV68_RS08735 WP_391087433.1 1916307..1916894(-) (tfoX) [Vibrio sp. NH-UV-68]
ATGGATATGACAGAGCAAAAGTTTATTCAATACGTTAAAAAGTTTGGCGACTTTCAAAAACGCTCGATGTTTGGTGGTAC
TGGACTGTTTAAAGAAGAGGCTATGTTTGCCTTAATAAGTAACGACCATGTTTTTATTCGTGGTGGTGAGAAGCTCGATA
ACGAGTTATCGCAACTAGGCTGCGAAAAGTATCGTCACGTTAAAAAACAGACAACGGCAACGGTAAACTACTATGATGTC
ACCACGCTCTTTGTGACCAACGACAGCAAGATAGCCCGTCTTGTCGAAGAATCTATTACCTATTCGGTTTCTGAGCGTGA
ATATAAACGTTCATATGCTAATCGCCGGCTACGTGATTTACCCAATATGCAGTTAACACTGGAGCGCATGGTCAAAAAAG
CCGGAATAGAAGATGTCGATACTTTTGTTGAGCTTGGCCCTTCAGCGGTGTTCTCTAGAGTGAAGCAGGCTTATGGCAGC
GATGTTGATGTGAAGTTATTGTGGAAGTTTGCAGGTGCGATAGAAGGCATTCATTGGAAACTAATCCAGGAGCCGCGTAA
ACGCCAATTACTGGCTAATTGTCACTAA

Domains

Predicted by InterproScan.

TfoX N-terminal domain (TfoX_N)

(11-100)

TfoX C-terminal domain (TfoX_C)

(114-193)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  tfoX Vibrio campbellii strain DS40M4

69.744

100

0.697
  tfoX Vibrio cholerae O1 biovar El Tor str. N16961

69.43

98.974

0.687
  tfoX Vibrio cholerae O1 biovar El Tor strain DRC-193A

69.43

98.974

0.687
  tfoX Vibrio cholerae O1 biovar El Tor strain P27459

69.43

98.974

0.687
  tfoX Vibrio cholerae O1 biovar El Tor strain E7946

69.43

98.974

0.687
  tfoX Vibrio cholerae strain A1552

69.43

98.974

0.687
  tfoX Vibrio parahaemolyticus RIMD 2210633

67.179

100

0.672
  tfoX Aliivibrio fischeri ES114

57.592

97.949

0.564