Detailed information
Bioinformatically predicted
Overview
| Name | ssbA | Type | Machinery gene |
| Locus tag | RND68_RS13230 | Genome accession | NZ_CP134882 |
| Coordinates | 2577522..2578025 (-) | Length | 167 a.a. |
| NCBI ID | WP_000934799.1 | Uniprot ID | A0A7U7IE99 |
| Organism | Staphylococcus aureus strain 10-5-1 | ||
| Function | ssDNA binding (predicted from homology) DNA processing |
||
Related MGE
Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.
Gene-MGE association summary
| MGE type | MGE coordinates | Gene coordinates | Relative position | Distance (bp) |
|---|---|---|---|---|
| Prophage | 2557855..2580175 | 2577522..2578025 | within | 0 |
Gene organization within MGE regions
Location: 2557855..2580175
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| RND68_RS13080 (RND68_13080) | - | 2557855..2558109 (-) | 255 | WP_000466746.1 | GlsB/YeaQ/YmgE family stress response membrane protein | - |
| RND68_RS13085 (RND68_13085) | - | 2558403..2558666 (+) | 264 | WP_001055897.1 | helix-turn-helix transcriptional regulator | - |
| RND68_RS13090 (RND68_13090) | - | 2558804..2559376 (-) | 573 | WP_000769723.1 | PepSY domain-containing protein | - |
| RND68_RS13095 (RND68_13095) | - | 2559557..2559925 (-) | 369 | WP_000849155.1 | YxeA family protein | - |
| RND68_RS13100 (RND68_13100) | - | 2560162..2560876 (+) | 715 | Protein_2544 | tyrosine-type recombinase/integrase | - |
| RND68_RS13105 (RND68_13105) | - | 2560882..2561889 (+) | 1008 | WP_001080636.1 | Abi family protein | - |
| RND68_RS13110 (RND68_13110) | - | 2562653..2562832 (-) | 180 | WP_000797954.1 | hypothetical protein | - |
| RND68_RS13115 (RND68_13115) | - | 2562848..2563360 (-) | 513 | WP_000813311.1 | hypothetical protein | - |
| RND68_RS13120 (RND68_13120) | - | 2563478..2563879 (-) | 402 | WP_000683457.1 | hypothetical protein | - |
| RND68_RS13125 (RND68_13125) | - | 2564057..2565025 (-) | 969 | WP_000801980.1 | Abi family protein | - |
| RND68_RS13135 (RND68_13135) | - | 2565302..2565871 (-) | 570 | WP_001293071.1 | terminase small subunit | - |
| RND68_RS13140 (RND68_13140) | - | 2565868..2566080 (-) | 213 | WP_001656917.1 | hypothetical protein | - |
| RND68_RS13145 (RND68_13145) | - | 2566212..2566739 (-) | 528 | WP_000771361.1 | spore coat protein | - |
| RND68_RS13150 (RND68_13150) | - | 2566792..2567445 (-) | 654 | WP_000214170.1 | hypothetical protein | - |
| RND68_RS13155 (RND68_13155) | - | 2567476..2567820 (-) | 345 | WP_001288442.1 | hypothetical protein | - |
| RND68_RS13160 (RND68_13160) | - | 2568528..2569169 (-) | 642 | WP_001019762.1 | hypothetical protein | - |
| RND68_RS13165 (RND68_13165) | - | 2569166..2569546 (-) | 381 | WP_000356942.1 | hypothetical protein | - |
| RND68_RS13170 (RND68_13170) | - | 2569856..2571565 (-) | 1710 | WP_000447468.1 | DUF927 domain-containing protein | - |
| RND68_RS13175 (RND68_13175) | - | 2571579..2572448 (-) | 870 | WP_001002709.1 | primase alpha helix C-terminal domain-containing protein | - |
| RND68_RS13180 (RND68_13180) | tscT | 2572513..2572839 (-) | 327 | WP_001103967.1 | type II toxin-antitoxin system toxin TscT | - |
| RND68_RS13185 (RND68_13185) | - | 2572840..2573223 (-) | 384 | WP_000403837.1 | hypothetical protein | - |
| RND68_RS13190 (RND68_13190) | - | 2573225..2573428 (-) | 204 | WP_001231376.1 | hypothetical protein | - |
| RND68_RS13195 (RND68_13195) | - | 2573395..2573568 (-) | 174 | WP_000784892.1 | hypothetical protein | - |
| RND68_RS13200 (RND68_13200) | - | 2573580..2573852 (-) | 273 | WP_001138305.1 | helix-turn-helix domain-containing protein | - |
| RND68_RS13205 (RND68_13205) | - | 2573853..2574017 (-) | 165 | WP_001611932.1 | helix-turn-helix domain-containing protein | - |
| RND68_RS13210 (RND68_13210) | - | 2574166..2574789 (+) | 624 | WP_000230361.1 | helix-turn-helix transcriptional regulator | - |
| RND68_RS13215 (RND68_13215) | - | 2574950..2576164 (+) | 1215 | WP_000270135.1 | site-specific integrase | - |
| RND68_RS13220 (RND68_13220) | - | 2576277..2576996 (+) | 720 | WP_313291655.1 | type II toxin-antitoxin system PemK/MazF family toxin | - |
| RND68_RS13225 (RND68_13225) | rpsR | 2577228..2577470 (-) | 243 | WP_000897044.1 | 30S ribosomal protein S18 | - |
| RND68_RS13230 (RND68_13230) | ssbA | 2577522..2578025 (-) | 504 | WP_000934799.1 | single-stranded DNA-binding protein | Machinery gene |
| RND68_RS13235 (RND68_13235) | rpsF | 2578046..2578342 (-) | 297 | WP_001261460.1 | 30S ribosomal protein S6 | - |
| RND68_RS13240 (RND68_13240) | - | 2578586..2578777 (+) | 192 | WP_274409422.1 | hypothetical protein | - |
| RND68_RS13245 (RND68_13245) | ychF | 2578863..2579960 (-) | 1098 | WP_001218732.1 | redox-regulated ATPase YchF | - |
| RND68_RS13250 (RND68_13250) | - | 2579972..2580175 (-) | 204 | WP_000157348.1 | DUF951 domain-containing protein | - |
Sequence
Protein
Download Length: 167 a.a. Molecular weight: 18539.12 Da Isoelectric Point: 4.7305
>NTDB_id=884327 RND68_RS13230 WP_000934799.1 2577522..2578025(-) (ssbA) [Staphylococcus aureus strain 10-5-1]
MLNRVVLVGRLTKDPEYRTTPSGVSVATFTLAVNRTFTNAQGEREADFINCVVFRRQADNVNNYLSKGSLAGVDGRLQSR
NYENQEGRRVFVTEVVCDSVQFLEPKNAQQNGGQRQQNEFQDYGQGFGGQQSGQNNSYNNSSNTKQSDNPFANANGPIDI
SDDDLPF
MLNRVVLVGRLTKDPEYRTTPSGVSVATFTLAVNRTFTNAQGEREADFINCVVFRRQADNVNNYLSKGSLAGVDGRLQSR
NYENQEGRRVFVTEVVCDSVQFLEPKNAQQNGGQRQQNEFQDYGQGFGGQQSGQNNSYNNSSNTKQSDNPFANANGPIDI
SDDDLPF
Nucleotide
Download Length: 504 bp
>NTDB_id=884327 RND68_RS13230 WP_000934799.1 2577522..2578025(-) (ssbA) [Staphylococcus aureus strain 10-5-1]
ATGCTAAATAGAGTTGTATTAGTAGGTCGTTTAACGAAAGATCCGGAATACAGAACCACTCCCTCAGGTGTGAGTGTAGC
GACATTCACTCTTGCAGTAAATCGTACGTTCACGAATGCTCAAGGGGAGCGCGAAGCAGATTTTATTAACTGTGTTGTTT
TTAGAAGACAAGCAGATAATGTAAATAACTATTTATCTAAAGGTAGTTTAGCTGGTGTAGATGGTCGCTTACAATCCCGT
AATTATGAAAATCAAGAAGGTCGTCGTGTGTTTGTTACTGAAGTTGTGTGTGATAGCGTTCAATTCCTTGAACCTAAAAA
TGCACAACAAAATGGTGGCCAACGTCAACAAAATGAATTCCAAGATTACGGTCAAGGATTCGGTGGTCAACAATCAGGAC
AAAACAATTCGTACAATAATTCATCAAACACGAAACAATCTGATAATCCATTTGCAAATGCAAACGGACCGATTGATATA
AGTGATGATGACTTACCATTCTAA
ATGCTAAATAGAGTTGTATTAGTAGGTCGTTTAACGAAAGATCCGGAATACAGAACCACTCCCTCAGGTGTGAGTGTAGC
GACATTCACTCTTGCAGTAAATCGTACGTTCACGAATGCTCAAGGGGAGCGCGAAGCAGATTTTATTAACTGTGTTGTTT
TTAGAAGACAAGCAGATAATGTAAATAACTATTTATCTAAAGGTAGTTTAGCTGGTGTAGATGGTCGCTTACAATCCCGT
AATTATGAAAATCAAGAAGGTCGTCGTGTGTTTGTTACTGAAGTTGTGTGTGATAGCGTTCAATTCCTTGAACCTAAAAA
TGCACAACAAAATGGTGGCCAACGTCAACAAAATGAATTCCAAGATTACGGTCAAGGATTCGGTGGTCAACAATCAGGAC
AAAACAATTCGTACAATAATTCATCAAACACGAAACAATCTGATAATCCATTTGCAAATGCAAACGGACCGATTGATATA
AGTGATGATGACTTACCATTCTAA
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| ssbA | Bacillus subtilis subsp. subtilis str. 168 |
65.341 |
100 |
0.689 |
| ssb | Latilactobacillus sakei subsp. sakei 23K |
54.971 |
100 |
0.563 |
| ssbB | Bacillus subtilis subsp. subtilis str. 168 |
58.491 |
63.473 |
0.371 |
| ssb | Glaesserella parasuis strain SC1401 |
34.463 |
100 |
0.365 |