Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   RLW41_RS16700 Genome accession   NZ_CP134870
Coordinates   3453851..3454372 (+) Length   173 a.a.
NCBI ID   WP_409562832.1    Uniprot ID   -
Organism   Hyphomicrobium sp. DY-1     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 3448851..3459372
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RLW41_RS16685 (RLW41_16605) - 3451111..3451725 (+) 615 WP_409562829.1 hypothetical protein -
  RLW41_RS16690 (RLW41_16610) - 3451885..3452277 (-) 393 WP_409562830.1 GFA family protein -
  RLW41_RS16695 (RLW41_16615) - 3453088..3453456 (-) 369 WP_414462189.1 YkgJ family cysteine cluster protein -
  RLW41_RS16700 (RLW41_16620) ssb 3453851..3454372 (+) 522 WP_409562832.1 single-stranded DNA-binding protein Machinery gene
  RLW41_RS16705 (RLW41_16625) - 3454857..3455834 (-) 978 WP_409562833.1 cation diffusion facilitator family transporter -
  RLW41_RS16710 (RLW41_16630) - 3455949..3456794 (-) 846 WP_414462190.1 phosphatase PAP2 family protein -
  RLW41_RS16715 (RLW41_16635) - 3456781..3457113 (+) 333 WP_414462191.1 hypothetical protein -
  RLW41_RS16720 (RLW41_16640) - 3457398..3458090 (-) 693 WP_414462192.1 OmpW/AlkL family protein -
  RLW41_RS16725 (RLW41_16645) - 3458521..3459105 (+) 585 WP_414462193.1 Crp/Fnr family transcriptional regulator -

Sequence

Protein


Download         Length: 173 a.a.        Molecular weight: 18575.67 Da        Isoelectric Point: 7.9740

>NTDB_id=884224 RLW41_RS16700 WP_409562832.1 3453851..3454372(+) (ssb) [Hyphomicrobium sp. DY-1]
MAGSVNKVILVGNVGKDPEIRRTQDGRPIANLSIATSDTWRDKQTGERKEKTEWHRVVVFSEPLCKIIEQYVKKGAKLYI
EGALQTRKWTDQSGAEKYSTEVVIQGYNGTLTMLDGAGGGRGASIGMQESGPDYASDGGFGSSSGGEPRRASGSRSGGSK
PSFDKALDDEIPF

Nucleotide


Download         Length: 522 bp        

>NTDB_id=884224 RLW41_RS16700 WP_409562832.1 3453851..3454372(+) (ssb) [Hyphomicrobium sp. DY-1]
ATGGCAGGGTCGGTCAACAAAGTTATTCTGGTCGGCAATGTCGGCAAGGATCCGGAGATCCGCCGCACGCAGGATGGCCG
CCCGATCGCCAATTTGAGCATCGCGACGAGCGATACCTGGCGCGACAAGCAGACGGGTGAGCGCAAGGAAAAGACCGAGT
GGCATCGCGTCGTCGTCTTCAGTGAGCCGTTGTGCAAGATCATCGAGCAGTACGTGAAGAAGGGCGCGAAGCTCTACATC
GAAGGCGCACTGCAGACGCGTAAGTGGACGGATCAGTCTGGCGCGGAGAAGTATTCGACCGAGGTCGTCATCCAGGGCTA
CAACGGCACGCTGACGATGCTTGATGGCGCAGGCGGCGGACGCGGCGCGTCGATTGGTATGCAAGAGAGCGGTCCGGATT
ACGCGTCAGACGGCGGTTTCGGTTCGAGTTCGGGTGGTGAACCCCGGCGCGCGTCGGGTTCCAGGAGCGGCGGTTCGAAG
CCGAGCTTCGACAAAGCGCTCGACGATGAGATACCCTTCTGA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(5-105)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

48.333

100

0.503
  ssb Glaesserella parasuis strain SC1401

42.553

100

0.462
  ssb Neisseria gonorrhoeae MS11

35.979

100

0.393
  ssb Neisseria meningitidis MC58

35.45

100

0.387