Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   RN347_RS16260 Genome accession   NZ_CP134866
Coordinates   3558824..3559444 (-) Length   206 a.a.
NCBI ID   WP_311958926.1    Uniprot ID   -
Organism   Halomonas sp. PAMB 3264     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 3553824..3564444
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RN347_RS16240 (RN347_16240) fabA 3555138..3555653 (+) 516 WP_252105831.1 3-hydroxyacyl-[acyl-carrier-protein] dehydratase FabA -
  RN347_RS16245 (RN347_16245) fabB 3555666..3556883 (+) 1218 WP_263585813.1 beta-ketoacyl-ACP synthase I -
  RN347_RS16250 (RN347_16250) - 3557111..3557872 (-) 762 WP_263585812.1 1-acyl-sn-glycerol-3-phosphate acyltransferase -
  RN347_RS16255 (RN347_16255) - 3557869..3558768 (-) 900 WP_311958925.1 sugar nucleotide-binding protein -
  RN347_RS16260 (RN347_16260) ssb 3558824..3559444 (-) 621 WP_311958926.1 single-stranded DNA-binding protein Machinery gene
  RN347_RS16265 (RN347_16265) - 3559602..3560984 (-) 1383 WP_263585809.1 MFS transporter -
  RN347_RS16270 (RN347_16270) uvrA 3561216..3564047 (+) 2832 WP_311958927.1 excinuclease ABC subunit UvrA -

Sequence

Protein


Download         Length: 206 a.a.        Molecular weight: 22415.17 Da        Isoelectric Point: 5.2389

>NTDB_id=884196 RN347_RS16260 WP_311958926.1 3558824..3559444(-) (ssb) [Halomonas sp. PAMB 3264]
MARGINKVILIGNLGQDPEVRFTPSGTAVANLNLATSDTWTDRQSGQRQERTEWHRVVLFNKTAEIAQQYLKKGSKVYVE
GRLQTRKWQDQNGQDRYSTEIVANDMQMLDSRGGDFQGGGAPQQNYQNGAPQGGQSYPGNQPNNQPSHQNAPPQGNQYGG
GQQSAPPQGGQGAPNRGGQSAPNDQNGRFGAPDPGNFDDFDDEIPF

Nucleotide


Download         Length: 621 bp        

>NTDB_id=884196 RN347_RS16260 WP_311958926.1 3558824..3559444(-) (ssb) [Halomonas sp. PAMB 3264]
ATGGCGCGCGGGATTAACAAAGTCATTTTGATCGGTAACCTGGGTCAGGACCCGGAAGTACGTTTCACGCCGTCGGGCAC
GGCGGTAGCGAACCTGAATCTGGCAACCTCGGATACCTGGACCGACCGCCAAAGCGGCCAGCGCCAGGAGCGCACCGAGT
GGCACCGCGTCGTGCTGTTCAACAAGACCGCCGAGATCGCCCAGCAGTACCTGAAAAAAGGCTCCAAGGTCTACGTCGAA
GGGCGCCTGCAAACCCGCAAGTGGCAGGACCAGAACGGCCAGGACCGCTACAGCACCGAGATCGTGGCCAACGACATGCA
GATGCTCGATAGCCGCGGCGGCGATTTCCAGGGCGGCGGCGCGCCGCAGCAGAACTATCAGAACGGCGCCCCGCAGGGTG
GCCAGAGCTATCCTGGCAATCAGCCCAACAACCAGCCCAGCCATCAGAACGCGCCGCCCCAGGGCAATCAGTACGGCGGC
GGTCAGCAGAGTGCTCCCCCGCAGGGCGGTCAAGGCGCACCCAATCGCGGCGGCCAAAGCGCGCCGAACGATCAAAACGG
CCGCTTCGGCGCGCCGGACCCGGGTAACTTCGACGATTTCGACGACGAAATTCCGTTCTGA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(5-109)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

49.289

100

0.505
  ssb Glaesserella parasuis strain SC1401

48.077

100

0.485
  ssb Neisseria gonorrhoeae MS11

45.588

99.029

0.451
  ssb Neisseria meningitidis MC58

45.545

98.058

0.447