Detailed information    

insolico Bioinformatically predicted

Overview

Name   qstR   Type   Regulator
Locus tag   RI132_RS13040 Genome accession   NZ_CP134783
Coordinates   2811788..2812435 (+) Length   215 a.a.
NCBI ID   WP_045596394.1    Uniprot ID   -
Organism   Vibrio vulnificus strain GCU-01     
Function   promote expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 2806788..2817435
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RI132_RS13025 (RI132_13025) - 2807326..2808786 (-) 1461 WP_130191635.1 MSHA biogenesis protein MshI -
  RI132_RS13030 (RI132_13030) csrD 2808799..2810796 (-) 1998 WP_045596393.1 RNase E specificity factor CsrD -
  RI132_RS13035 (RI132_13035) ssb 2810949..2811488 (-) 540 WP_011079389.1 single-stranded DNA-binding protein Machinery gene
  RI132_RS13040 (RI132_13040) qstR 2811788..2812435 (+) 648 WP_045596394.1 response regulator transcription factor Regulator
  RI132_RS13045 (RI132_13045) galU 2812625..2813497 (+) 873 WP_011079387.1 UTP--glucose-1-phosphate uridylyltransferase GalU -
  RI132_RS13050 (RI132_13050) uvrA 2813639..2816461 (+) 2823 WP_311888102.1 excinuclease ABC subunit UvrA -

Sequence

Protein


Download         Length: 215 a.a.        Molecular weight: 24691.67 Da        Isoelectric Point: 9.8565

>NTDB_id=883742 RI132_RS13040 WP_045596394.1 2811788..2812435(+) (qstR) [Vibrio vulnificus strain GCU-01]
MRKSSYARKPFFISLQNEQTPEFVTVLAKQIQMEIPVITPATLMQADPNHRNRILLIDHQQHKVLLREIKNLPLIWKGFE
TVLCNVPSRLTTEELIGFGQCKAIFYRDTAMTDMAKGLNSVINGKSWLPRDVSAQLIHYYRNMVCSHTSPVNVDLTMREI
QVLRCVQSGKSNSQIAEDLFISEFTVKSHLYQTFRKLSVKNRVQAAAWADQNLIS

Nucleotide


Download         Length: 648 bp        

>NTDB_id=883742 RI132_RS13040 WP_045596394.1 2811788..2812435(+) (qstR) [Vibrio vulnificus strain GCU-01]
ATGAGAAAATCTTCTTACGCGCGGAAGCCATTTTTTATCAGTTTGCAAAACGAACAAACTCCTGAGTTCGTCACGGTATT
AGCTAAACAGATTCAAATGGAGATCCCTGTGATTACCCCGGCAACGCTCATGCAAGCCGATCCCAATCATCGTAACCGCA
TCTTATTGATTGATCATCAGCAACATAAGGTGCTGTTGAGAGAAATTAAAAACCTACCCCTGATATGGAAAGGGTTTGAA
ACGGTCCTGTGTAATGTACCTAGCCGATTGACGACTGAGGAACTGATCGGTTTTGGCCAGTGCAAAGCGATCTTCTACCG
AGACACCGCCATGACAGACATGGCCAAAGGACTAAATTCGGTGATTAATGGCAAAAGCTGGCTGCCACGCGACGTCAGCG
CACAACTCATCCACTACTATCGAAATATGGTGTGTTCACACACTTCACCAGTGAATGTGGATCTCACGATGAGAGAAATT
CAAGTGTTACGCTGCGTGCAATCTGGCAAGTCAAACTCTCAAATCGCCGAAGATCTTTTCATTAGTGAATTCACCGTAAA
GTCGCATCTCTATCAAACCTTTAGAAAGCTCTCCGTGAAGAATCGTGTCCAAGCTGCCGCGTGGGCTGACCAAAATTTGA
TCTCATAA

Domains

Predicted by InterproScan.

Bacterial regulatory proteins, luxR family (GerE)

(155-209)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  qstR Vibrio parahaemolyticus RIMD 2210633

60.93

100

0.609
  qstR Vibrio campbellii strain DS40M4

60.93

100

0.609
  qstR Vibrio cholerae strain A1552

47.196

99.535

0.47