Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   RI132_RS13035 Genome accession   NZ_CP134783
Coordinates   2810949..2811488 (-) Length   179 a.a.
NCBI ID   WP_011079389.1    Uniprot ID   Q7MHB8
Organism   Vibrio vulnificus strain GCU-01     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 2805949..2816488
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RI132_RS13015 (RI132_13015) - 2806366..2806686 (-) 321 WP_011079393.1 MSHA biogenesis protein MshK -
  RI132_RS13020 (RI132_13020) gspM 2806679..2807329 (-) 651 WP_045596391.1 type II secretion system protein GspM -
  RI132_RS13025 (RI132_13025) - 2807326..2808786 (-) 1461 WP_130191635.1 MSHA biogenesis protein MshI -
  RI132_RS13030 (RI132_13030) csrD 2808799..2810796 (-) 1998 WP_045596393.1 RNase E specificity factor CsrD -
  RI132_RS13035 (RI132_13035) ssb 2810949..2811488 (-) 540 WP_011079389.1 single-stranded DNA-binding protein Machinery gene
  RI132_RS13040 (RI132_13040) qstR 2811788..2812435 (+) 648 WP_045596394.1 response regulator transcription factor Regulator
  RI132_RS13045 (RI132_13045) galU 2812625..2813497 (+) 873 WP_011079387.1 UTP--glucose-1-phosphate uridylyltransferase GalU -
  RI132_RS13050 (RI132_13050) uvrA 2813639..2816461 (+) 2823 WP_311888102.1 excinuclease ABC subunit UvrA -

Sequence

Protein


Download         Length: 179 a.a.        Molecular weight: 19794.97 Da        Isoelectric Point: 5.2358

>NTDB_id=883741 RI132_RS13035 WP_011079389.1 2810949..2811488(-) (ssb) [Vibrio vulnificus strain GCU-01]
MASRGINKVILVGNLGNDPEIRYMPSGGAVANITVATSETWRDKATGEPREKTEWHRVTLYGKLAEVAGEYLRKGSQVYI
EGQLQTRKWQDQNGQDRYSTEVVVQGYNGIMQMLGGRQQQGGAPAMGGAPQQQQGGWGQPQQPAAQPSYQKQAPAQQQPM
QSQPQYNEPPMDFDDDIPF

Nucleotide


Download         Length: 540 bp        

>NTDB_id=883741 RI132_RS13035 WP_011079389.1 2810949..2811488(-) (ssb) [Vibrio vulnificus strain GCU-01]
ATGGCCAGCCGTGGAATTAACAAAGTAATCTTGGTAGGGAACTTAGGTAACGACCCTGAAATTCGTTACATGCCAAGTGG
CGGTGCGGTGGCGAATATCACCGTTGCAACTTCAGAAACTTGGCGCGACAAAGCGACAGGCGAGCCGCGTGAGAAAACAG
AATGGCACCGTGTGACGTTATACGGCAAGCTGGCAGAAGTCGCGGGTGAATACCTACGCAAAGGTTCTCAAGTCTACATT
GAAGGACAACTGCAAACGCGTAAATGGCAAGACCAAAATGGTCAAGACCGTTATTCAACTGAAGTCGTTGTACAAGGCTA
CAATGGCATTATGCAAATGTTGGGTGGCCGTCAGCAGCAAGGTGGCGCTCCAGCGATGGGCGGTGCTCCGCAGCAGCAAC
AAGGTGGTTGGGGCCAGCCTCAACAGCCAGCCGCACAGCCGTCTTACCAAAAGCAGGCTCCGGCGCAACAACAGCCAATG
CAGTCTCAGCCTCAGTACAATGAGCCGCCAATGGACTTTGACGACGACATTCCGTTCTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(6-105)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB Q7MHB8

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

83.333

100

0.838
  ssb Glaesserella parasuis strain SC1401

53.804

100

0.553
  ssb Neisseria meningitidis MC58

46.237

100

0.48
  ssb Neisseria gonorrhoeae MS11

46.237

100

0.48