Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   MPHASIOC01_RS25555 Genome accession   NZ_CP134782
Coordinates   5327862..5328410 (-) Length   182 a.a.
NCBI ID   WP_064596724.1    Uniprot ID   A0A1B7L599
Organism   Mangrovibacter phragmitis strain ASIOC01     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 5322862..5333410
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MPHASIOC01_RS25535 (MPHASIOC01_005087) - 5322969..5323556 (-) 588 WP_064596716.1 SMI1/KNR4 family protein -
  MPHASIOC01_RS25540 (MPHASIOC01_005088) malI 5323670..5324692 (-) 1023 WP_064596718.1 Mal regulon transcriptional regulator MalI -
  MPHASIOC01_RS25545 (MPHASIOC01_005089) malX 5324929..5326500 (+) 1572 WP_353613562.1 maltose/glucose-specific PTS transporter subunit IIBC -
  MPHASIOC01_RS25550 (MPHASIOC01_005090) - 5326576..5327754 (+) 1179 WP_353613563.1 MalY/PatB family protein -
  MPHASIOC01_RS25555 (MPHASIOC01_005091) ssb 5327862..5328410 (-) 549 WP_064596724.1 single-stranded DNA-binding protein SSB1 Machinery gene
  MPHASIOC01_RS25560 (MPHASIOC01_005092) uvrA 5328670..5331495 (+) 2826 WP_064596726.1 excinuclease ABC subunit UvrA -
  MPHASIOC01_RS25565 (MPHASIOC01_005093) - 5331503..5331856 (-) 354 WP_353613564.1 MmcQ/YjbR family DNA-binding protein -
  MPHASIOC01_RS25570 (MPHASIOC01_005094) - 5331862..5332278 (-) 417 WP_064596730.1 secondary thiamine-phosphate synthase enzyme YjbQ -
  MPHASIOC01_RS25575 (MPHASIOC01_005095) aphA 5332413..5333123 (-) 711 WP_064596732.1 acid phosphatase AphA -

Sequence

Protein


Download         Length: 182 a.a.        Molecular weight: 19532.58 Da        Isoelectric Point: 5.2456

>NTDB_id=883702 MPHASIOC01_RS25555 WP_064596724.1 5327862..5328410(-) (ssb) [Mangrovibacter phragmitis strain ASIOC01]
MASRGVNKVILVGNLGQDPEVRYMPNGGAVANITLATSESWRDKQTGEMKEQTEWHRVVLFGKLAEVAGEYLRKGSQVYI
EGQLRTRKWQDQSGQERYTTEIVVNVGGTMQMLGGRQGGQGGAPMGGNQGNQGGQSGWGQPQQPQGNNAAFSGGAQSRPQ
QAPSAPAPSNEPPMDFDDDIPF

Nucleotide


Download         Length: 549 bp        

>NTDB_id=883702 MPHASIOC01_RS25555 WP_064596724.1 5327862..5328410(-) (ssb) [Mangrovibacter phragmitis strain ASIOC01]
ATGGCCAGCAGAGGCGTAAACAAGGTGATTCTCGTCGGTAACCTGGGCCAGGACCCGGAAGTACGCTATATGCCAAATGG
TGGCGCAGTAGCCAACATTACGCTGGCTACTTCCGAATCCTGGCGTGACAAGCAGACCGGTGAAATGAAAGAGCAGACTG
AATGGCACCGCGTTGTGTTGTTCGGCAAGCTGGCTGAGGTCGCAGGTGAATATCTGCGTAAAGGTTCACAGGTTTATATT
GAAGGCCAGTTGCGTACCCGTAAATGGCAGGATCAGAGTGGCCAGGAACGTTACACTACTGAAATCGTGGTTAACGTTGG
CGGCACCATGCAAATGCTGGGTGGTCGTCAGGGTGGCCAGGGTGGCGCGCCAATGGGTGGCAACCAGGGTAACCAGGGCG
GGCAAAGTGGCTGGGGTCAGCCGCAGCAGCCGCAAGGCAATAACGCTGCATTCAGTGGTGGCGCGCAGTCTCGTCCACAA
CAGGCTCCGAGCGCGCCAGCACCATCTAACGAACCACCAATGGATTTCGACGACGATATTCCGTTCTGA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(6-112)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A1B7L599

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

72.131

100

0.725
  ssb Glaesserella parasuis strain SC1401

58.421

100

0.61
  ssb Neisseria meningitidis MC58

48.634

100

0.489
  ssb Neisseria gonorrhoeae MS11

48.634

100

0.489