Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   RMR04_RS11860 Genome accession   NZ_CP134779
Coordinates   2205810..2206352 (+) Length   180 a.a.
NCBI ID   WP_311914815.1    Uniprot ID   A0AA95ZN94
Organism   Bosea sp. 685     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 2200810..2211352
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RMR04_RS11840 (RMR04_11840) - 2201148..2202287 (-) 1140 WP_311914813.1 ABC transporter substrate-binding protein -
  RMR04_RS11845 (RMR04_11845) - 2202476..2203159 (-) 684 WP_311915808.1 GntR family transcriptional regulator -
  RMR04_RS11850 (RMR04_11850) - 2203196..2204032 (-) 837 WP_311914814.1 isocitrate lyase/PEP mutase family protein -
  RMR04_RS11855 (RMR04_11855) - 2204176..2205642 (+) 1467 WP_410492235.1 FAD-binding oxidoreductase -
  RMR04_RS11860 (RMR04_11860) ssb 2205810..2206352 (+) 543 WP_311914815.1 single-stranded DNA-binding protein Machinery gene
  RMR04_RS11865 (RMR04_11865) - 2206751..2207620 (-) 870 WP_311914816.1 flagellar motor protein MotB -
  RMR04_RS11870 (RMR04_11870) motA 2207649..2208506 (-) 858 WP_311914817.1 flagellar motor stator protein MotA -
  RMR04_RS11875 (RMR04_11875) - 2209078..2210664 (+) 1587 WP_311914818.1 ABC transporter substrate-binding protein -
  RMR04_RS11880 (RMR04_11880) - 2210879..2211349 (-) 471 WP_311915810.1 VOC family protein -

Sequence

Protein


Download         Length: 180 a.a.        Molecular weight: 19375.44 Da        Isoelectric Point: 7.2065

>NTDB_id=883652 RMR04_RS11860 WP_311914815.1 2205810..2206352(+) (ssb) [Bosea sp. 685]
MAGSVNKVILVGNLGRDPEVRRLGSGEPVVNLRIATSETWRDKQSGEKKERTEWHSVVIFNENLAKVAEQYLKKGSKIYI
EGQLQTRKWQDQSGVEKYTTEIVLQRFRGELTILDSRGQGGSDEYGESGGAMEDRSGGGSSFGRSSPMGGGNAPRQPAMA
GGGGGGGRSSSTHLDDDIPF

Nucleotide


Download         Length: 543 bp        

>NTDB_id=883652 RMR04_RS11860 WP_311914815.1 2205810..2206352(+) (ssb) [Bosea sp. 685]
ATGGCTGGTAGCGTCAACAAGGTCATTCTGGTCGGCAATCTCGGGCGCGATCCCGAAGTGCGGCGTCTCGGCAGCGGCGA
GCCCGTGGTCAATCTGCGGATCGCCACCTCCGAAACCTGGCGCGACAAGCAGTCGGGCGAGAAGAAGGAGCGCACCGAGT
GGCACTCGGTCGTGATCTTCAACGAGAACCTCGCCAAGGTCGCCGAGCAATATCTGAAGAAGGGCTCGAAGATTTATATC
GAGGGCCAGCTCCAGACCCGCAAATGGCAGGATCAGTCGGGTGTCGAGAAATACACCACCGAGATCGTGCTGCAGCGCTT
CCGTGGCGAACTGACCATCCTCGACAGCCGGGGGCAGGGCGGTTCGGACGAATATGGCGAAAGCGGCGGCGCGATGGAGG
ATCGCTCGGGCGGCGGCAGCTCCTTTGGCCGGTCGAGCCCGATGGGCGGCGGCAATGCACCGCGCCAGCCCGCCATGGCG
GGCGGCGGTGGTGGCGGTGGTCGCTCATCTTCGACCCATCTCGACGACGATATTCCGTTCTAG

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(5-107)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Glaesserella parasuis strain SC1401

46.842

100

0.494
  ssb Vibrio cholerae strain A1552

48.864

97.778

0.478
  ssb Neisseria gonorrhoeae MS11

42.473

100

0.439
  ssb Neisseria meningitidis MC58

41.935

100

0.433