Detailed information NTG0883540

Bioinformatically predicted

Overview

• Name: pilR
• Type: Regulator
• Locus tag: RMV18_RS25305
• Genome accession: NZ_CP134774
• Coordinates: 5676233..5677579 (+)
• Length: 448 a.a.
• NCBI ID: WP_108227016.1
• Uniprot ID: -
• Organism: Pseudomonas sp. VD-NE ext
• Function: regulate pilin expression (predicted from homology) Competence regulation

Genomic Context

Location: 5671233..5682579

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
RMV18_RS25280	pgeF	5671439..5672161 (-)	723	WP_311883403.1	peptidoglycan editing factor PgeF	-
RMV18_RS25285	rluD	5672158..5673120 (-)	963	WP_034153865.1	23S rRNA pseudouridine(1911/1915/1917) synthase RluD	-
RMV18_RS25290	-	5673272..5674288 (+)	1017	WP_007909854.1	outer membrane protein assembly factor BamD	-
RMV18_RS25295	-	5674415..5674657 (+)	243	WP_034153864.1	PP0621 family protein	-
RMV18_RS25300	pilS	5674647..5676236 (+)	1590	WP_311883407.1	ATP-binding protein	Regulator
RMV18_RS25305	pilR	5676233..5677579 (+)	1347	WP_108227016.1	sigma-54 dependent transcriptional regulator	Regulator
RMV18_RS25310	thiO	5677702..5678802 (-)	1101	WP_311883411.1	glycine oxidase ThiO	-
RMV18_RS25315	-	5678859..5679260 (-)	402	WP_093434831.1	type IV pilin protein	-
RMV18_RS25320	-	5679276..5682365 (-)	3090	WP_311883414.1	PilC/PilY family type IV pilus protein	-

Sequence

Protein

• Length: 448 a.a.
• Molecular weight: 50005.22 Da
• Isoelectric Point: 5.9886

>NTDB_id=883540 RMV18_RS25305 WP_108227016.1 5676233..5677579(+) (pilR) [Pseudomonas sp. VD-NE ext]
MNTSPRQKILIVDDEPDIRELLEITLGRMKLDTYSARNLSEAQALLNREGFDLCLTDMRLPDGTGLELVQHIQQRYPQLP
VAMITAYGSLETAINALKAGAFDFLTKPVDLNRLRELVGSALRMPAAGGGCTSIDRRLLGDSLPMRNLRKQIDKLARSQA
PVYISGESGSGKELVARLIHEQGPRANQPFVPVNCGAIPSELMESEFFGHRKGSFTGAVEDKPGLFQAAHGGTLFLDEVA
DLPLSMQVKLLRAIQEKAVRSVGGQQESVVDVRILCATHKDLDAEVAAERFRQDLYYRLNVIELRVPSLRERRDDIEVLA
ANMLKRLAKDSAQPVASLHPQALEALKNYRFPGNVRELENVLERAHTLCEDRTIEAEDLRLSEGNCAADGGIADLTQIDN
LEDYLENVERKLILQALEETRWNRTAAAQRLSLSFRSMRYRLKKLGLD

Nucleotide

• Length: 1347 bp

>NTDB_id=883540 RMV18_RS25305 WP_108227016.1 5676233..5677579(+) (pilR) [Pseudomonas sp. VD-NE ext]
TTGAATACGAGCCCACGGCAAAAAATCCTCATCGTCGACGACGAACCGGACATCCGCGAACTCCTGGAAATCACCCTGGG
ACGGATGAAACTCGACACTTACAGTGCACGTAACCTGAGCGAAGCCCAGGCGCTGCTGAACCGCGAGGGCTTTGACCTGT
GCCTGACCGACATGCGCCTGCCCGACGGTACCGGGCTGGAGCTGGTGCAGCACATTCAGCAACGTTATCCACAACTGCCG
GTGGCAATGATCACCGCCTACGGCAGTCTGGAAACCGCGATCAATGCGCTGAAGGCCGGCGCTTTCGACTTTCTGACCAA
ACCGGTGGACCTCAATCGCCTGCGCGAACTGGTTGGCTCGGCCCTGCGCATGCCAGCGGCGGGCGGTGGATGCACCTCGA
TCGATCGGCGCCTGCTCGGCGACTCGCTGCCTATGCGCAACCTGCGCAAACAGATCGACAAACTCGCTCGCAGCCAAGCG
CCGGTGTATATCAGCGGCGAATCGGGCAGCGGCAAGGAACTGGTCGCACGACTGATTCATGAACAAGGGCCACGCGCCAA
CCAACCCTTCGTGCCGGTGAACTGCGGCGCGATCCCTTCGGAACTGATGGAAAGCGAATTCTTCGGCCACCGCAAAGGCA
GTTTCACCGGCGCGGTCGAGGACAAGCCCGGGCTGTTTCAGGCGGCCCATGGCGGCACGCTGTTTCTCGATGAAGTCGCG
GACTTGCCGTTGTCGATGCAGGTAAAACTGCTGCGGGCGATTCAGGAAAAAGCCGTGCGCAGTGTCGGTGGTCAGCAGGA
AAGCGTGGTTGATGTACGGATTCTCTGCGCCACGCACAAGGATCTCGACGCGGAGGTGGCGGCCGAACGCTTTCGTCAGG
ATCTGTATTACCGCTTGAACGTGATTGAACTGCGCGTGCCGTCCCTGCGTGAGCGGCGCGATGACATTGAAGTGCTGGCG
GCCAATATGCTCAAGCGTTTGGCCAAGGACAGTGCTCAGCCCGTTGCGAGCCTTCATCCACAGGCGCTGGAAGCGCTGAA
GAATTACCGGTTTCCGGGGAATGTGCGGGAGCTGGAGAACGTGCTCGAACGGGCGCACACCTTGTGCGAAGACCGGACGA
TCGAGGCTGAAGATTTGCGCCTGAGTGAAGGCAACTGCGCGGCGGACGGCGGGATCGCCGATCTGACGCAGATCGACAAT
CTTGAGGATTATCTGGAGAACGTCGAGAGAAAGCTGATTCTGCAAGCGTTGGAAGAAACGCGCTGGAATCGTACGGCGGC
GGCGCAGCGGTTGAGTCTTTCGTTCAGGTCAATGCGTTATCGGCTGAAAAAACTCGGCCTGGATTGA

Domains

Predicted by InterproScan.

• Response regulator receiver domain (Response_reg) (9-118)

• Bacterial regulatory protein, Fis family (HTH_8) (405-445)

• Sigma-54 interaction domain (Sigma54_activat) (139-304)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilR	Pseudomonas aeruginosa PAK	79.007	98.884	0.781
pilR	Acinetobacter baumannii strain A118	49.02	100	0.502
luxO	Vibrio cholerae strain A1552	37.162	99.107	0.368