Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilS   Type   Regulator
Locus tag   RMV18_RS25300 Genome accession   NZ_CP134774
Coordinates   5674647..5676236 (+) Length   529 a.a.
NCBI ID   WP_311883407.1    Uniprot ID   -
Organism   Pseudomonas sp. VD-NE ext     
Function   regulate pilin expression (predicted from homology)   
Competence regulation

Genomic Context

Location: 5669647..5681236
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RMV18_RS25280 pgeF 5671439..5672161 (-) 723 WP_311883403.1 peptidoglycan editing factor PgeF -
  RMV18_RS25285 rluD 5672158..5673120 (-) 963 WP_034153865.1 23S rRNA pseudouridine(1911/1915/1917) synthase RluD -
  RMV18_RS25290 - 5673272..5674288 (+) 1017 WP_007909854.1 outer membrane protein assembly factor BamD -
  RMV18_RS25295 - 5674415..5674657 (+) 243 WP_034153864.1 PP0621 family protein -
  RMV18_RS25300 pilS 5674647..5676236 (+) 1590 WP_311883407.1 ATP-binding protein Regulator
  RMV18_RS25305 pilR 5676233..5677579 (+) 1347 WP_108227016.1 sigma-54 dependent transcriptional regulator Regulator
  RMV18_RS25310 thiO 5677702..5678802 (-) 1101 WP_311883411.1 glycine oxidase ThiO -
  RMV18_RS25315 - 5678859..5679260 (-) 402 WP_093434831.1 type IV pilin protein -

Sequence

Protein


Download         Length: 529 a.a.        Molecular weight: 58657.34 Da        Isoelectric Point: 6.5047

>NTDB_id=883539 RMV18_RS25300 WP_311883407.1 5674647..5676236(+) (pilS) [Pseudomonas sp. VD-NE ext]
MIAEATHADSKQAQRLLRLYHLYRLSVGITLVLLISSNMDNRLLTSANDELLRGGSWLYLVLNILLVVFLENPRRPAQLF
SLALVDVLLLCGLFYAAGGVASALGNLLIVSVAISNTLLRRRIGLLIAAIGALGIVALSFLLSFSHPLSANEYLQAGTLG
ALCFAASLLVQGLIRRLEVSEILAERRASEVVGLEALNALILQRMRTGILVLDEERRVQLANHSAQTLLAQTHLQGHLID
EYSTALVDRLQLWMNNPTLRPQSLKIPGNGLELQPNFIALEQSPNQQTLVFLEDLAQVAQQAQQLKLAALGRLTAGISHE
IRNPLGAISHAAQLLAESEELDSADRRLTQIIQDHSQRMNRVIENVLQLSRRQQSAPQRLDLKPWLENFVAESREQASER
QQIHLRINSGEFITLMDPNQLTQILDNLLRNGWRHSALLHDQAEVWLALFTDADSQLAVLEVQDNGPGVPADEQTHLFEP
FFTTSSQGTGLGLYLSRELCESNQARLDFQSRQGGGCFRITFAHGRKQS

Nucleotide


Download         Length: 1590 bp        

>NTDB_id=883539 RMV18_RS25300 WP_311883407.1 5674647..5676236(+) (pilS) [Pseudomonas sp. VD-NE ext]
GTGATCGCTGAGGCCACCCACGCCGACAGCAAACAGGCGCAGCGCCTGCTGCGCCTCTACCATCTCTACCGTTTAAGCGT
CGGCATCACCCTGGTGTTGCTGATCTCCAGCAACATGGACAACCGCCTGCTGACGTCGGCCAATGACGAATTGCTGCGCG
GCGGCAGTTGGCTGTACCTCGTTCTCAACATCCTGCTCGTGGTCTTTCTTGAAAACCCCCGACGCCCGGCCCAGTTGTTC
AGCCTGGCGCTGGTCGATGTGCTGTTGCTGTGCGGCCTGTTCTATGCGGCCGGTGGCGTCGCCAGTGCCCTCGGCAACTT
GCTGATTGTCTCGGTGGCGATCAGCAATACCTTGCTGCGTCGTCGAATTGGTCTGTTGATCGCCGCGATCGGCGCTCTGG
GCATCGTCGCCTTGAGCTTTCTGCTGAGCTTCAGCCACCCTCTGAGCGCCAATGAATACTTGCAGGCCGGCACCCTCGGC
GCGCTGTGCTTTGCCGCGTCGTTGTTGGTGCAAGGCTTGATTCGTCGCCTGGAGGTCAGCGAAATCCTGGCTGAGCGCCG
TGCCAGCGAGGTGGTGGGGCTTGAAGCCCTCAACGCGCTGATCCTGCAACGCATGCGCACCGGCATTCTGGTCCTCGACG
AGGAGCGCCGGGTGCAACTGGCCAACCACAGCGCCCAGACGCTACTGGCGCAAACGCATCTCCAAGGTCATTTGATCGAC
GAGTATTCGACGGCGTTGGTCGATCGCCTGCAACTGTGGATGAACAACCCGACCCTGCGCCCGCAAAGCCTGAAAATCCC
CGGCAACGGCCTCGAACTGCAGCCGAACTTCATCGCTCTGGAGCAGAGTCCGAACCAGCAAACCCTGGTCTTTCTCGAAG
ATCTGGCGCAAGTCGCGCAACAAGCCCAACAACTCAAACTCGCCGCGCTCGGACGCCTGACCGCCGGCATCTCCCACGAA
ATTCGCAATCCGCTGGGCGCCATCAGTCATGCCGCGCAGCTATTGGCCGAGTCCGAGGAACTCGACAGCGCCGATCGACG
TCTGACGCAGATCATTCAAGACCACTCTCAGCGCATGAACCGAGTCATCGAAAACGTCCTGCAACTGTCCCGCCGCCAGC
AAAGTGCACCGCAACGCCTGGATCTCAAGCCATGGCTGGAAAACTTCGTTGCCGAAAGCCGCGAACAGGCCAGCGAGCGC
CAGCAGATTCATCTGCGGATCAACTCGGGGGAGTTCATCACGCTGATGGACCCCAACCAGCTCACGCAAATTCTCGACAA
CCTGTTACGCAACGGCTGGCGCCACAGCGCCCTGTTGCACGATCAGGCCGAAGTCTGGCTGGCCCTGTTCACCGATGCCG
ACAGCCAGTTGGCGGTCCTCGAAGTGCAGGATAACGGCCCCGGCGTCCCGGCCGATGAGCAGACTCATCTGTTCGAACCG
TTTTTCACCACCAGCAGCCAAGGCACCGGCCTTGGGCTTTATCTGTCCCGTGAGCTGTGCGAAAGCAACCAAGCGCGCCT
AGACTTCCAATCACGCCAAGGCGGCGGCTGCTTTCGCATCACCTTTGCTCACGGACGGAAACAAAGTTGA

Domains

Predicted by InterproScan.

His Kinase A (phospho-acceptor) domain (HisKA)

(309-374)

Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase (HATPase_c)

(417-521)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilS Pseudomonas aeruginosa PAK

59.434

100

0.595