Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   RJE46_RS21920 Genome accession   NZ_CP134767
Coordinates   4531281..4531817 (-) Length   178 a.a.
NCBI ID   WP_004115562.1    Uniprot ID   A0A7H5AC63
Organism   Cedecea neteri strain A2     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 4526281..4536817
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RJE46_RS21880 (RJE46_21880) - 4526726..4527298 (-) 573 WP_038991137.1 restriction endonuclease -
  RJE46_RS21885 (RJE46_21885) - 4527298..4527831 (-) 534 WP_038991135.1 integrating conjugative element protein -
  RJE46_RS21890 (RJE46_21890) - 4527837..4528472 (-) 636 WP_006785961.1 transglycosylase SLT domain-containing protein -
  RJE46_RS21895 (RJE46_21895) - 4528451..4529173 (-) 723 WP_006785960.1 TIGR03759 family integrating conjugative element protein -
  RJE46_RS21900 (RJE46_21900) - 4529185..4529943 (-) 759 WP_311887972.1 hypothetical protein -
  RJE46_RS21905 (RJE46_21905) - 4529940..4530605 (-) 666 WP_052263193.1 PilL N-terminal domain-containing protein -
  RJE46_RS21910 (RJE46_21910) - 4530742..4530990 (-) 249 WP_029593099.1 DUF2442 domain-containing protein -
  RJE46_RS21915 (RJE46_21915) - 4530974..4531216 (-) 243 WP_004115560.1 DUF4160 domain-containing protein -
  RJE46_RS21920 (RJE46_21920) ssb 4531281..4531817 (-) 537 WP_004115562.1 single-stranded DNA-binding protein Machinery gene
  RJE46_RS21925 (RJE46_21925) - 4531878..4532348 (-) 471 WP_038991133.1 STY4534 family ICE replication protein -
  RJE46_RS21930 (RJE46_21930) - 4532984..4534993 (-) 2010 WP_038991132.1 DNA topoisomerase III -
  RJE46_RS21935 (RJE46_21935) - 4535009..4535563 (-) 555 WP_038991130.1 hypothetical protein -
  RJE46_RS21940 (RJE46_21940) - 4535565..4536290 (-) 726 WP_038991128.1 PFL_4669 family integrating conjugative element protein -

Sequence

Protein


Download         Length: 178 a.a.        Molecular weight: 19140.23 Da        Isoelectric Point: 6.7295

>NTDB_id=883401 RJE46_RS21920 WP_004115562.1 4531281..4531817(-) (ssb) [Cedecea neteri strain A2]
MSSRGVNKVILVGNLGQDPEVRYIPNGSAVATLSLATSESWRDKQSGEQKEVTEWHRVVIFGKLAEIAGEYLRKGSQVYI
EGQLRTRKWTDQAGQDKYTTEVVVNIGGTMQMLGGRQSGSGQNTSSRNDWGQPQQPSGPTHSGQASGSSAGAPPMDFDDD
IPFIGFGYGVPKSAIHAL

Nucleotide


Download         Length: 537 bp        

>NTDB_id=883401 RJE46_RS21920 WP_004115562.1 4531281..4531817(-) (ssb) [Cedecea neteri strain A2]
ATGTCCTCACGCGGCGTTAACAAGGTTATTCTTGTCGGAAACCTCGGCCAGGATCCTGAAGTTCGTTATATTCCTAACGG
CAGTGCAGTTGCCACCCTTTCGCTGGCCACGTCTGAGAGCTGGCGCGATAAGCAGTCCGGTGAACAGAAAGAAGTGACCG
AATGGCATCGGGTGGTTATTTTCGGCAAGCTGGCAGAAATTGCGGGTGAATATCTGCGTAAAGGCTCCCAGGTTTACATC
GAGGGCCAGCTGCGCACACGCAAATGGACCGATCAAGCCGGCCAGGATAAATACACCACAGAGGTGGTGGTCAATATTGG
TGGCACCATGCAGATGCTTGGCGGTCGGCAGTCCGGCAGCGGTCAGAATACGTCTTCCCGGAATGACTGGGGCCAGCCTC
AGCAACCTTCCGGACCGACTCACAGTGGCCAGGCTTCCGGCAGCAGTGCCGGTGCGCCACCGATGGACTTCGATGACGAT
ATACCGTTTATTGGATTCGGGTATGGAGTACCAAAATCGGCAATCCATGCACTCTGA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(6-112)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A7H5AC63

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

64.407

99.438

0.64
  ssb Glaesserella parasuis strain SC1401

50.276

100

0.511
  ssb Neisseria meningitidis MC58

44.068

99.438

0.438
  ssb Neisseria gonorrhoeae MS11

43.75

98.876

0.433