Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   AACG43_RS22080 Genome accession   NZ_CP151063
Coordinates   4571164..4571700 (-) Length   178 a.a.
NCBI ID   WP_000168305.1    Uniprot ID   A0A370V115
Organism   Escherichia coli strain 20KM2762     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 4566164..4576700
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AACG43_RS22060 soxR 4567892..4568356 (-) 465 WP_000412428.1 redox-sensitive transcriptional activator SoxR -
  AACG43_RS22065 soxS 4568442..4568765 (+) 324 WP_000019358.1 superoxide response transcriptional regulator SoxS -
  AACG43_RS22070 pdeC 4568768..4570354 (-) 1587 WP_000019549.1 c-di-GMP phosphodiesterase PdeC -
  AACG43_RS22075 yjcB 4570784..4571065 (+) 282 WP_001341690.1 YjcB family protein -
  AACG43_RS22080 ssb 4571164..4571700 (-) 537 WP_000168305.1 single-stranded DNA-binding protein SSB1 Machinery gene
  AACG43_RS22085 uvrA 4571954..4574776 (+) 2823 WP_000357740.1 excinuclease ABC subunit UvrA Machinery gene
  AACG43_RS22090 yjbR 4574811..4575167 (-) 357 WP_000155657.1 MmcQ/YjbR family DNA-binding protein -
  AACG43_RS22095 yjbQ 4575171..4575587 (-) 417 WP_023143127.1 secondary thiamine-phosphate synthase enzyme YjbQ -
  AACG43_RS22100 aphA 4575698..4576411 (-) 714 WP_001307512.1 acid phosphatase AphA -

Sequence

Protein


Download         Length: 178 a.a.        Molecular weight: 18975.00 Da        Isoelectric Point: 5.2358

>NTDB_id=883173 AACG43_RS22080 WP_000168305.1 4571164..4571700(-) (ssb) [Escherichia coli strain 20KM2762]
MASRGVNKVILVGNLGQDPEVRYMPNGGAVANITLATSESWRDKATGEMKEQTEWHRVVLFGKLAEVASEYLRKGSQVYI
EGQLRTRKWTDQSGQDRYTTEVVVNVGGTMQMLGGRQGGGAPAGGNIGGGQPQGGWGQPQQPQGGNQFSGGAQSRPQQSA
PAAPSNEPPMDFDDDIPF

Nucleotide


Download         Length: 537 bp        

>NTDB_id=883173 AACG43_RS22080 WP_000168305.1 4571164..4571700(-) (ssb) [Escherichia coli strain 20KM2762]
ATGGCCAGCAGAGGCGTAAACAAGGTTATTCTCGTTGGTAATCTGGGTCAGGACCCGGAAGTACGCTACATGCCAAATGG
TGGCGCAGTTGCCAACATTACGCTGGCTACTTCCGAATCCTGGCGTGATAAAGCGACCGGCGAGATGAAAGAACAGACTG
AATGGCACCGCGTTGTGCTGTTCGGCAAACTGGCAGAAGTGGCCAGCGAATATCTGCGTAAAGGTTCTCAGGTTTATATC
GAAGGTCAGCTGCGTACCCGTAAATGGACCGATCAATCCGGTCAGGATCGCTACACCACAGAAGTCGTGGTGAACGTTGG
CGGCACCATGCAGATGCTGGGTGGTCGTCAGGGTGGTGGCGCTCCGGCAGGTGGTAATATCGGTGGTGGTCAGCCGCAGG
GCGGTTGGGGTCAGCCTCAGCAGCCGCAGGGTGGCAATCAGTTCAGCGGCGGCGCGCAGTCTCGCCCGCAGCAGTCCGCT
CCGGCAGCGCCGTCTAACGAGCCGCCGATGGACTTTGATGATGACATTCCGTTCTGA

Domains

Predicted by InterProScan.

Single-strand binding protein family (SSB)

(6-112)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A370V115

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

74.444

100

0.753
  ssb Glaesserella parasuis strain SC1401

57.923

100

0.596
  ssb Neisseria meningitidis MC58

48.066

100

0.489
  ssb Neisseria gonorrhoeae MS11

48.066

100

0.489