Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilM   Type   Machinery gene
Locus tag   RMA73_RS07370 Genome accession   NZ_CP134704
Coordinates   1584464..1585522 (-) Length   352 a.a.
NCBI ID   WP_009579136.1    Uniprot ID   A0A1M4ICA6
Organism   Xanthomonas translucens pv. translucens strain CO236     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1579464..1590522
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RMA73_RS07350 (RMA73_07375) - 1580625..1582526 (-) 1902 WP_311536980.1 type IV pilus secretin PilQ family protein -
  RMA73_RS07355 (RMA73_07380) - 1582547..1583071 (-) 525 WP_170874096.1 pilus assembly protein PilP -
  RMA73_RS07360 (RMA73_07385) - 1583083..1583757 (-) 675 WP_003477342.1 type 4a pilus biogenesis protein PilO -
  RMA73_RS07365 (RMA73_07390) - 1583754..1584464 (-) 711 WP_058360779.1 PilN domain-containing protein -
  RMA73_RS07370 (RMA73_07395) pilM 1584464..1585522 (-) 1059 WP_009579136.1 pilus assembly protein PilM Machinery gene
  RMA73_RS07375 (RMA73_07400) - 1585739..1588168 (+) 2430 WP_058360778.1 penicillin-binding protein 1A -
  RMA73_RS07380 (RMA73_07405) - 1588360..1589007 (+) 648 WP_003477352.1 hypothetical protein -
  RMA73_RS07385 (RMA73_07410) - 1589067..1589402 (+) 336 WP_003477354.1 hypothetical protein -

Sequence

Protein


Download         Length: 352 a.a.        Molecular weight: 37681.36 Da        Isoelectric Point: 4.4880

>NTDB_id=883006 RMA73_RS07370 WP_009579136.1 1584464..1585522(-) (pilM) [Xanthomonas translucens pv. translucens strain CO236]
MGLIPKSQQPLIGVDISSTAVKLLQLSRSGNRFRVEHYAVEPLPPNAVVEKNIVEVEAVGEAIRRAVTRSGTRARHAAAA
VAGSAVITKLIPMPAELDESELEAQVELEAVNYIPYPIEEVNLDFEVLGIIPNNPEMVQVLLAASRSENVELRQSALELG
GLIAKVMDVEAFAVENAFALVASELPVAADGVVALVDIGATMTTLNVLRGGRSLYSREQVFGGKQLTDEVMRRYGLTYEE
AGMAKRQGGLPESYAIEVLEPFKEATVQQISRLLQFFYAGSEFNRVDHIVLAGGCAALAGLPEMVEEQLGVATVVANPLA
QMTLGPKVQAHALAQDAPALMIATGLALRSFD

Nucleotide


Download         Length: 1059 bp        

>NTDB_id=883006 RMA73_RS07370 WP_009579136.1 1584464..1585522(-) (pilM) [Xanthomonas translucens pv. translucens strain CO236]
GTGGGGCTTATCCCAAAGAGTCAGCAACCGCTGATCGGTGTCGATATCAGTTCGACTGCGGTCAAACTGTTGCAGCTGTC
GCGTAGCGGCAATCGGTTCCGCGTAGAGCATTATGCCGTGGAACCCCTGCCGCCCAACGCCGTGGTCGAGAAGAACATCG
TCGAGGTCGAAGCCGTGGGCGAGGCGATCCGCCGCGCCGTGACCCGTTCCGGCACCCGCGCCAGGCATGCCGCGGCGGCG
GTGGCCGGCTCGGCGGTGATCACCAAGCTGATCCCGATGCCGGCCGAACTGGACGAGAGCGAACTGGAAGCGCAGGTCGA
GCTGGAGGCGGTCAACTACATCCCGTATCCGATCGAGGAAGTGAACCTGGACTTCGAGGTGCTGGGGATCATCCCCAACA
ATCCGGAGATGGTGCAGGTGCTGCTGGCCGCGTCGCGTTCGGAGAACGTCGAGCTGCGCCAGTCGGCGCTGGAGCTCGGC
GGCTTGATCGCCAAGGTCATGGACGTGGAGGCCTTCGCGGTCGAGAACGCGTTCGCGCTGGTCGCCAGCGAGTTGCCGGT
GGCCGCCGACGGCGTGGTCGCCCTGGTCGATATCGGCGCCACCATGACCACGCTCAACGTGCTGCGCGGCGGGCGCAGCC
TGTACAGCCGCGAACAGGTGTTCGGCGGCAAGCAGCTGACCGACGAAGTGATGCGCCGCTACGGCCTGACCTACGAGGAA
GCCGGCATGGCCAAGCGCCAGGGCGGGTTGCCGGAAAGCTACGCGATCGAGGTGCTGGAGCCGTTCAAGGAGGCGACGGT
GCAGCAGATCAGCCGGCTGCTGCAGTTCTTCTACGCCGGCAGCGAATTCAACCGGGTCGACCACATCGTGCTGGCCGGCG
GTTGCGCGGCGCTGGCCGGGTTGCCGGAGATGGTCGAGGAACAACTGGGGGTGGCGACCGTGGTCGCCAACCCGCTGGCG
CAGATGACCCTGGGGCCGAAGGTCCAGGCGCATGCGCTGGCCCAGGACGCGCCGGCGCTGATGATCGCCACCGGCCTGGC
TCTGAGGAGCTTCGACTGA

Domains

Predicted by InterproScan.

Type IV pilus assembly protein PilM; (PilM_2)

(13-351)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A1M4ICA6

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilM Acinetobacter baumannii D1279779

51.136

100

0.511
  comM Acinetobacter nosocomialis M2

50.852

100

0.509
  comM Acinetobacter baylyi ADP1

50

99.432

0.497
  pilM Legionella pneumophila strain ERS1305867

46.286

99.432

0.46