Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilM   Type   Machinery gene
Locus tag   RMA82_RS06400 Genome accession   NZ_CP134702
Coordinates   1505103..1506161 (-) Length   352 a.a.
NCBI ID   WP_003471536.1    Uniprot ID   A0A109HJ64
Organism   Xanthomonas translucens pv. undulosa strain CO237     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1500103..1511161
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RMA82_RS06380 (RMA82_06380) - 1501252..1503153 (-) 1902 WP_038239345.1 type IV pilus secretin PilQ family protein -
  RMA82_RS06385 (RMA82_06385) - 1503174..1503713 (-) 540 WP_003471528.1 pilus assembly protein PilP -
  RMA82_RS06390 (RMA82_06390) - 1503710..1504384 (-) 675 WP_003471530.1 type 4a pilus biogenesis protein PilO -
  RMA82_RS06395 (RMA82_06395) - 1504381..1505103 (-) 723 WP_003471534.1 PilN domain-containing protein -
  RMA82_RS06400 (RMA82_06400) pilM 1505103..1506161 (-) 1059 WP_003471536.1 pilus assembly protein PilM Machinery gene
  RMA82_RS06405 (RMA82_06405) - 1506378..1508806 (+) 2429 Protein_1260 penicillin-binding protein 1A -
  RMA82_RS06410 (RMA82_06410) - 1508998..1509645 (+) 648 WP_047325229.1 hypothetical protein -
  RMA82_RS06415 (RMA82_06415) - 1509684..1509878 (-) 195 WP_139116005.1 hypothetical protein -

Sequence

Protein


Download         Length: 352 a.a.        Molecular weight: 37699.39 Da        Isoelectric Point: 4.4880

>NTDB_id=882992 RMA82_RS06400 WP_003471536.1 1505103..1506161(-) (pilM) [Xanthomonas translucens pv. undulosa strain CO237]
MGLIPKSQQPLIGVDISSTAVKLLQLSRSGNRFRVEHYAVEPLPPNAVVEKNIVEVEAVGEAIRRAVTRSGTRARHAAAA
VAGSAVITKLIPMPAELDESELEAQVELEAVNYIPYPIEEVNLDFEVLGIIPNNPEMVQVLLAASRSENVELRQSALELG
GLIAKVMDVEAFAVENAFAMVASELPVAADGVVALVDIGATMTTLNVLRGGRSLYSREQVFGGKQLTDEVMRRYGLTYEE
AGMAKRQGGLPESYAIEVLEPFKEATVQQISRLLQFFYAGSEFNRVDHIVLAGGCAALAGLPEMVEEQLGVATVVANPLA
QMTLGPKVQAHALAQDAPALMIATGLALRSFD

Nucleotide


Download         Length: 1059 bp        

>NTDB_id=882992 RMA82_RS06400 WP_003471536.1 1505103..1506161(-) (pilM) [Xanthomonas translucens pv. undulosa strain CO237]
GTGGGGCTTATCCCAAAGAGTCAGCAACCGCTGATCGGTGTCGATATCAGTTCGACTGCGGTCAAACTGTTGCAGCTGTC
GCGTAGCGGCAATCGGTTCCGCGTAGAGCACTATGCCGTGGAACCCCTGCCGCCCAACGCCGTGGTCGAGAAGAACATCG
TCGAGGTCGAAGCCGTGGGCGAGGCGATCCGCCGCGCCGTGACCCGTTCCGGTACCCGCGCCAGGCATGCCGCGGCGGCG
GTGGCCGGCTCGGCGGTGATCACCAAGCTGATCCCGATGCCGGCCGAACTGGACGAGAGCGAACTGGAAGCGCAGGTCGA
GTTGGAGGCGGTCAACTACATCCCGTATCCGATCGAGGAAGTGAACCTGGACTTCGAGGTGCTGGGGATCATCCCCAACA
ATCCGGAGATGGTGCAGGTGCTGCTGGCCGCGTCGCGTTCGGAGAACGTCGAGCTGCGCCAGTCGGCGCTGGAGCTCGGC
GGCTTGATCGCCAAGGTCATGGACGTGGAGGCCTTCGCGGTCGAGAACGCGTTCGCGATGGTTGCCAGCGAGTTGCCGGT
GGCCGCCGACGGCGTGGTCGCCCTGGTCGATATCGGCGCCACCATGACCACGCTCAACGTGCTGCGCGGCGGGCGCAGCC
TGTACAGCCGCGAACAGGTGTTCGGCGGCAAGCAGCTGACCGACGAAGTGATGCGCCGCTACGGCCTGACCTACGAGGAA
GCCGGCATGGCCAAGCGCCAGGGCGGGCTGCCGGAAAGCTACGCGATCGAGGTGCTGGAGCCGTTCAAGGAGGCGACGGT
GCAGCAGATCAGCCGCCTGCTGCAGTTCTTCTACGCCGGCAGCGAATTCAACCGGGTCGACCACATCGTGCTGGCCGGCG
GTTGCGCGGCGCTGGCCGGGTTGCCGGAGATGGTCGAGGAACAACTGGGGGTGGCGACCGTGGTCGCCAACCCGCTGGCG
CAGATGACCCTGGGGCCGAAGGTCCAGGCGCATGCGCTGGCGCAGGACGCGCCGGCGCTGATGATCGCCACCGGCCTGGC
TCTGAGGAGCTTCGACTGA

Domains

Predicted by InterproScan.

Type IV pilus assembly protein PilM; (PilM_2)

(13-351)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A109HJ64

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilM Acinetobacter baumannii D1279779

51.136

100

0.511
  comM Acinetobacter nosocomialis M2

50.852

100

0.509
  comM Acinetobacter baylyi ADP1

50

99.432

0.497
  pilM Legionella pneumophila strain ERS1305867

46.286

99.432

0.46