Detailed information    

insolico Bioinformatically predicted

Overview

Name   radC   Type   Machinery gene
Locus tag   AACG38_RS19135 Genome accession   NZ_CP151045
Coordinates   3909687..3910163 (+) Length   158 a.a.
NCBI ID   WP_001186726.1    Uniprot ID   -
Organism   Escherichia coli strain 20KM0223N     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 3904687..3915163
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AACG38_RS19115 - 3905965..3906870 (+) 906 WP_000203530.1 diguanylate cyclase regulator RdcB family protein -
  AACG38_RS19120 - 3906867..3907937 (+) 1071 WP_021564623.1 patatin-like phospholipase family protein -
  AACG38_RS19125 - 3908277..3909095 (+) 819 WP_073991181.1 DUF932 domain-containing protein -
  AACG38_RS19130 - 3909187..3909672 (+) 486 WP_073991182.1 antirestriction protein -
  AACG38_RS19135 radC 3909687..3910163 (+) 477 WP_001186726.1 RadC family protein Machinery gene
  AACG38_RS19140 yeeT 3910226..3910447 (+) 222 WP_000692323.1 DUF987 domain-containing protein -
  AACG38_RS19145 - 3910610..3910984 (+) 375 WP_071342845.1 type IV toxin-antitoxin system YeeU family antitoxin -
  AACG38_RS19150 - 3911031..3911405 (+) 375 WP_001596171.1 TA system toxin CbtA family protein -
  AACG38_RS19155 - 3911402..3911893 (+) 492 WP_123000901.1 DUF5983 family protein -
  AACG38_RS19160 - 3911905..3912102 (+) 198 WP_001596173.1 DUF957 domain-containing protein -
  AACG38_RS19165 - 3912187..3913029 (+) 843 WP_042093078.1 DUF4942 domain-containing protein -
  AACG38_RS19170 yghD 3913310..3913846 (-) 537 WP_000942799.1 GspM family type II secretion system protein YghD -
  AACG38_RS19175 gspL 3913848..3915026 (-) 1179 WP_000094973.1 type II secretion system protein GspL -

Sequence

Protein


Download         Length: 158 a.a.        Molecular weight: 17673.32 Da        Isoelectric Point: 7.2020

>NTDB_id=882833 AACG38_RS19135 WP_001186726.1 3909687..3910163(+) (radC) [Escherichia coli strain 20KM0223N]
MQQLSFLPGEMTPGERSLILRALKTLDRHLHEPGVAFTSTRAAREWLILNMAGLEREEFRVLYLNNQNQLIAGETLFTGT
INRTEVHPREVIKRALYHNAAAVVLAHNHPSGEVTPSKADRLITERLVQALGLVDIRVPDHLIVGGNQVFSFAEHGLL

Nucleotide


Download         Length: 477 bp        

>NTDB_id=882833 AACG38_RS19135 WP_001186726.1 3909687..3910163(+) (radC) [Escherichia coli strain 20KM0223N]
ATGCAACAGCTTTCCTTTCTGCCCGGAGAGATGACGCCCGGCGAGCGCAGTCTCATTCTGCGGGCCCTGAAAACCCTGGA
CCGCCATCTTCATGAACCCGGCGTGGCCTTCACCTCCACCCGTGCGGCACGGGAATGGCTGATTCTGAACATGGCGGGAC
TGGAGCGTGAAGAGTTCCGGGTGCTGTATCTGAACAACCAGAATCAGCTGATTGCCGGTGAAACCCTCTTCACCGGTACC
ATCAACCGCACGGAAGTCCATCCCCGGGAAGTGATTAAACGCGCCCTGTATCACAATGCCGCTGCCGTGGTGCTGGCACA
CAATCACCCGTCCGGTGAAGTCACACCCAGCAAGGCAGACCGCCTTATCACGGAACGTCTGGTACAGGCACTGGGCCTGG
TGGATATCCGGGTGCCGGACCATCTGATAGTCGGTGGCAACCAGGTTTTCTCCTTTGCCGAACATGGTCTGCTTTAA

Domains

Predicted by InterProScan.

RadC-like JAB domain (RadC)

(38-157)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radC Haemophilus influenzae Rd KW20

54.867

71.519

0.392