Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   RLT86_RS16925 Genome accession   NZ_CP134601
Coordinates   3557731..3558312 (-) Length   193 a.a.
NCBI ID   WP_002068963.1    Uniprot ID   A0A9E9MD84
Organism   Acinetobacter baumannii strain XH1022     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 3552731..3563312
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RLT86_RS16900 (RLT86_16950) - 3552744..3554244 (+) 1501 Protein_3289 PLP-dependent aminotransferase family protein -
  RLT86_RS16905 (RLT86_16955) - 3554310..3555752 (-) 1443 WP_004742051.1 amino acid permease -
  RLT86_RS16910 (RLT86_16960) - 3556058..3556606 (-) 549 WP_000081859.1 helix-turn-helix domain-containing protein -
  RLT86_RS16915 (RLT86_16965) - 3556675..3557370 (+) 696 WP_000431603.1 AzlC family ABC transporter permease -
  RLT86_RS16920 (RLT86_16970) - 3557367..3557690 (+) 324 WP_000082715.1 AzlD domain-containing protein -
  RLT86_RS16925 (RLT86_16975) ssb 3557731..3558312 (-) 582 WP_002068963.1 single-stranded DNA-binding protein Machinery gene
  RLT86_RS16930 (RLT86_16980) - 3558364..3559728 (-) 1365 WP_000980460.1 MFS transporter -
  RLT86_RS16935 (RLT86_16985) - 3559875..3560957 (-) 1083 WP_000680211.1 DUF475 domain-containing protein -
  RLT86_RS16940 (RLT86_16990) tenA 3561220..3561894 (+) 675 WP_000899418.1 thiaminase II -
  RLT86_RS16945 (RLT86_16995) - 3561939..3562280 (-) 342 WP_000263327.1 GlpM family protein -
  RLT86_RS16950 (RLT86_17000) - 3562333..3562686 (-) 354 WP_000580165.1 DUF1304 domain-containing protein -

Sequence

Protein


Download         Length: 193 a.a.        Molecular weight: 21008.83 Da        Isoelectric Point: 6.4822

>NTDB_id=882284 RLT86_RS16925 WP_002068963.1 3557731..3558312(-) (ssb) [Acinetobacter baumannii strain XH1022]
MRGVNKVILVGTLGRDPETKTFPNGGSLTQFSIATSEVWTDKNTGERKEQTEWHRIVLHNRLGEIAQQFLRKGSKVYIEG
SLRTRQWTDQNGQERYTTEIRGDQMQMLDARQQGEQGFAGGNDFNQPRFNAPQQGGGYQNNNQGGGYGQNNGGYGGQGGF
GNGSNSPQGGGFAPKAPQQPASAPADLDDDLPF

Nucleotide


Download         Length: 582 bp        

>NTDB_id=882284 RLT86_RS16925 WP_002068963.1 3557731..3558312(-) (ssb) [Acinetobacter baumannii strain XH1022]
ATGCGTGGTGTAAATAAGGTTATTTTGGTTGGTACTTTGGGTCGTGATCCTGAAACAAAAACTTTTCCAAATGGGGGCTC
GTTGACCCAGTTTTCTATCGCAACAAGTGAAGTTTGGACCGATAAAAATACAGGTGAACGTAAAGAACAAACAGAATGGC
ACCGTATTGTTTTGCATAACCGTTTAGGGGAAATTGCTCAGCAGTTTTTACGTAAAGGTTCTAAGGTTTATATCGAAGGT
TCATTACGTACACGTCAGTGGACAGACCAAAATGGTCAAGAACGTTACACTACAGAAATCCGTGGCGACCAGATGCAAAT
GTTAGATGCTCGTCAACAAGGTGAACAAGGTTTTGCTGGCGGTAATGATTTTAACCAACCACGTTTTAACGCGCCTCAAC
AAGGTGGCGGCTATCAAAATAACAACCAAGGTGGTGGCTACGGCCAAAACAATGGTGGTTATGGTGGCCAAGGCGGTTTC
GGTAATGGTAGCAATAGCCCACAAGGTGGTGGTTTCGCTCCTAAAGCGCCACAACAACCAGCATCTGCACCAGCTGATTT
AGACGACGACTTACCGTTCTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(4-108)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Glaesserella parasuis strain SC1401

51.269

100

0.523
  ssb Vibrio cholerae strain A1552

44.724

100

0.461
  ssb Neisseria meningitidis MC58

39.086

100

0.399
  ssb Neisseria gonorrhoeae MS11

38.579

100

0.394