Detailed information    

insolico Bioinformatically predicted

Overview

Name   fimU   Type   Machinery gene
Locus tag   RLT86_RS16350 Genome accession   NZ_CP134601
Coordinates   3441833..3442306 (-) Length   157 a.a.
NCBI ID   WP_001214065.1    Uniprot ID   N9K1Q3
Organism   Acinetobacter baumannii strain XH1022     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3436833..3447306
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RLT86_RS16335 (RLT86_16385) pilX 3439462..3440280 (-) 819 WP_000149376.1 PilX N-terminal domain-containing pilus assembly protein Machinery gene
  RLT86_RS16340 (RLT86_16390) pilW 3440277..3441278 (-) 1002 WP_000079197.1 PilW family protein Machinery gene
  RLT86_RS16345 (RLT86_16395) pilV 3441279..3441839 (-) 561 WP_002194578.1 type IV pilus modification protein PilV Machinery gene
  RLT86_RS16350 (RLT86_16400) fimU 3441833..3442306 (-) 474 WP_001214065.1 Tfp pilus assembly protein FimT/FimU Machinery gene
  RLT86_RS16355 (RLT86_16405) ispH 3442476..3443426 (-) 951 WP_000407064.1 4-hydroxy-3-methylbut-2-enyl diphosphate reductase -
  RLT86_RS16360 (RLT86_16410) gmk 3443549..3444178 (+) 630 WP_000015937.1 guanylate kinase -
  RLT86_RS16365 (RLT86_16415) rpoZ 3444251..3444529 (+) 279 WP_000135049.1 DNA-directed RNA polymerase subunit omega -
  RLT86_RS16370 (RLT86_16420) - 3444568..3444698 (+) 131 Protein_3191 hypothetical protein -
  RLT86_RS16375 (RLT86_16425) - 3444738..3446843 (+) 2106 WP_001117590.1 bifunctional (p)ppGpp synthetase/guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase -

Sequence

Protein


Download         Length: 157 a.a.        Molecular weight: 16837.43 Da        Isoelectric Point: 8.5355

>NTDB_id=882277 RLT86_RS16350 WP_001214065.1 3441833..3442306(-) (fimU) [Acinetobacter baumannii strain XH1022]
MRGIIPQEGFTLVELMVTIAVMAIIALMAAPSMSNLLESKRLDANQRDLINTLSEAKSQAILGRQNVSVNLNSTASNTPT
SLNWQTASNNTLELKNIAADGTQSSLTTTTLAFNANGVVANITQDTLLSICNSRINKKKVIILTKLGTLVFKAEETC

Nucleotide


Download         Length: 474 bp        

>NTDB_id=882277 RLT86_RS16350 WP_001214065.1 3441833..3442306(-) (fimU) [Acinetobacter baumannii strain XH1022]
ATGAGGGGAATTATTCCGCAAGAAGGGTTCACCTTGGTCGAGCTAATGGTGACGATTGCGGTCATGGCTATTATTGCACT
GATGGCTGCGCCATCAATGTCAAATTTATTAGAAAGTAAACGTTTAGATGCTAATCAAAGAGACTTAATCAACACTTTAT
CAGAAGCGAAAAGTCAGGCAATTTTAGGCCGTCAGAATGTTTCTGTTAACTTGAACTCAACAGCTTCAAATACACCCACT
TCATTAAATTGGCAGACAGCTTCTAATAATACTCTTGAGCTAAAAAATATAGCCGCTGATGGTACGCAAAGTTCTTTAAC
GACTACCACTTTAGCTTTTAATGCAAATGGAGTAGTGGCAAATATAACTCAAGATACGCTTTTATCTATTTGTAATTCTA
GAATAAATAAAAAGAAAGTCATTATTTTGACCAAGCTTGGCACTTTAGTTTTTAAGGCCGAGGAGACTTGTTAA

Domains

Predicted by InterproScan.

Type II transport protein GspH (GspH)

(47-143)

Prokaryotic N-terminal methylation motif (N_methyl)

(7-29)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB N9K1Q3

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  fimU Acinetobacter baumannii D1279779

100

100

1