Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilO   Type   Machinery gene
Locus tag   RKQ54_RS18030 Genome accession   NZ_CP134589
Coordinates   3690661..3691401 (-) Length   246 a.a.
NCBI ID   WP_000081156.1    Uniprot ID   A0A009SCU3
Organism   Acinetobacter baumannii strain XH1024     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3685661..3696401
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RKQ54_RS18010 (RKQ54_18020) aroB 3686203..3687285 (-) 1083 WP_001193997.1 3-dehydroquinate synthase -
  RKQ54_RS18015 (RKQ54_18025) aroK 3687314..3687883 (-) 570 WP_000643712.1 shikimate kinase AroK -
  RKQ54_RS18020 (RKQ54_18030) pilQ 3687895..3690060 (-) 2166 WP_002062175.1 type IV pilus secretin PilQ family protein Machinery gene
  RKQ54_RS18025 (RKQ54_18035) pilP 3690123..3690650 (-) 528 WP_000695065.1 pilus assembly protein PilP Machinery gene
  RKQ54_RS18030 (RKQ54_18040) pilO 3690661..3691401 (-) 741 WP_000081156.1 type 4a pilus biogenesis protein PilO Machinery gene
  RKQ54_RS18035 (RKQ54_18045) pilN 3691398..3692039 (-) 642 WP_000201224.1 PilN domain-containing protein Machinery gene
  RKQ54_RS18040 (RKQ54_18050) pilM 3692039..3693097 (-) 1059 WP_002014066.1 pilus assembly protein PilM Machinery gene
  RKQ54_RS18045 (RKQ54_18055) ponA 3693260..3695815 (+) 2556 WP_038344376.1 penicillin-binding protein PBP1a -

Sequence

Protein


Download         Length: 246 a.a.        Molecular weight: 27818.60 Da        Isoelectric Point: 4.9608

>NTDB_id=881953 RKQ54_RS18030 WP_000081156.1 3690661..3691401(-) (pilO) [Acinetobacter baumannii strain XH1024]
MSQNELQELSLEQLSAKKKKFNLDKFLQQFNTLDMNNYGSWPISVKITCWIFIFFAVLALGYFIVIQPKLQAIDNAQAQE
SNLLNEFREKDSKLRNLQQYQVQLQEMQANFNQQLEQLPKETEIPSLVEDINLTGVNSGLKFKNIRLEDEVKQEIFIEQP
IAIEATGDYHAFGAFVSSIAALPRIVTMHDFTVDVSPAKDNKSDIPVLNYSIKAKTYRYVGATDTSEQTGKAPAASASTN
TTVQPK

Nucleotide


Download         Length: 741 bp        

>NTDB_id=881953 RKQ54_RS18030 WP_000081156.1 3690661..3691401(-) (pilO) [Acinetobacter baumannii strain XH1024]
ATGAGTCAAAACGAACTTCAAGAATTGTCATTAGAACAATTATCTGCAAAGAAAAAGAAATTTAATCTCGATAAATTCCT
TCAGCAATTTAATACGCTGGATATGAACAACTACGGTAGTTGGCCAATATCTGTAAAAATTACGTGTTGGATTTTTATTT
TCTTTGCTGTGTTAGCTTTGGGGTATTTCATTGTTATTCAACCGAAATTACAAGCTATTGATAATGCTCAAGCTCAGGAA
AGCAATTTATTAAACGAATTTCGTGAAAAAGACTCGAAATTACGTAACCTGCAACAGTATCAGGTGCAACTTCAAGAGAT
GCAGGCAAATTTCAACCAGCAACTAGAGCAGTTACCAAAAGAAACTGAGATTCCGAGTTTAGTTGAAGATATCAACTTAA
CAGGAGTGAACTCTGGATTGAAATTTAAAAATATTCGCTTGGAAGATGAAGTAAAGCAGGAAATTTTTATTGAGCAACCA
ATTGCCATAGAAGCGACCGGGGACTATCACGCATTTGGAGCTTTTGTAAGTAGTATCGCTGCTTTGCCTCGTATTGTAAC
CATGCACGATTTTACTGTTGATGTATCGCCAGCTAAAGATAACAAGTCTGATATTCCTGTGCTGAACTATTCCATTAAAG
CAAAAACATACCGATACGTAGGGGCAACAGATACATCGGAGCAAACAGGCAAAGCTCCAGCAGCATCTGCTTCAACGAAC
ACTACTGTTCAGCCGAAATAG

Domains

Predicted by InterproScan.

Pilus assembly protein, PilO (PilO)

(73-220)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A009SCU3

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilO Acinetobacter baumannii D1279779

99.593

100

0.996
  comO Acinetobacter baylyi ADP1

69.008

98.374

0.679