Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilN   Type   Machinery gene
Locus tag   RKQ54_RS18035 Genome accession   NZ_CP134589
Coordinates   3691398..3692039 (-) Length   213 a.a.
NCBI ID   WP_000201224.1    Uniprot ID   A0A009T8N7
Organism   Acinetobacter baumannii strain XH1024     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3686398..3697039
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RKQ54_RS18015 (RKQ54_18025) aroK 3687314..3687883 (-) 570 WP_000643712.1 shikimate kinase AroK -
  RKQ54_RS18020 (RKQ54_18030) pilQ 3687895..3690060 (-) 2166 WP_002062175.1 type IV pilus secretin PilQ family protein Machinery gene
  RKQ54_RS18025 (RKQ54_18035) pilP 3690123..3690650 (-) 528 WP_000695065.1 pilus assembly protein PilP Machinery gene
  RKQ54_RS18030 (RKQ54_18040) pilO 3690661..3691401 (-) 741 WP_000081156.1 type 4a pilus biogenesis protein PilO Machinery gene
  RKQ54_RS18035 (RKQ54_18045) pilN 3691398..3692039 (-) 642 WP_000201224.1 PilN domain-containing protein Machinery gene
  RKQ54_RS18040 (RKQ54_18050) pilM 3692039..3693097 (-) 1059 WP_002014066.1 pilus assembly protein PilM Machinery gene
  RKQ54_RS18045 (RKQ54_18055) ponA 3693260..3695815 (+) 2556 WP_038344376.1 penicillin-binding protein PBP1a -
  RKQ54_RS18050 (RKQ54_18060) - 3695833..3696657 (-) 825 WP_002125608.1 putative RNA methyltransferase -
  RKQ54_RS18055 (RKQ54_18065) - 3696660..3696992 (-) 333 WP_000169599.1 hypothetical protein -

Sequence

Protein


Download         Length: 213 a.a.        Molecular weight: 24029.39 Da        Isoelectric Point: 5.3968

>NTDB_id=881954 RKQ54_RS18035 WP_000201224.1 3691398..3692039(-) (pilN) [Acinetobacter baumannii strain XH1024]
MATINLLPWREELREQRKKQFITLCFGVVVLGITTVFGGWFYFDHKLDDQEQANQLIMSTNQNLDQQLKTLNGLQEQRDA
IIERMKLIQGLQSQRPVVVRLVDELVRVTPPAMYLTKFSRTGDKFTIEGKAESPNTVAELLRNLEASPWYRNAFMNSFLA
NEEKKDKAASSLLPRVEDHYGSFVVTVDLGEMGVTTTDDSAKPSTGESVGAAK

Nucleotide


Download         Length: 642 bp        

>NTDB_id=881954 RKQ54_RS18035 WP_000201224.1 3691398..3692039(-) (pilN) [Acinetobacter baumannii strain XH1024]
ATGGCAACAATTAATTTACTGCCTTGGCGCGAAGAGCTGAGGGAGCAACGAAAAAAACAATTCATAACGTTATGTTTTGG
GGTGGTTGTTTTGGGGATTACAACCGTATTTGGGGGATGGTTTTATTTTGACCATAAATTAGATGATCAAGAGCAAGCGA
ATCAGCTCATTATGAGCACAAATCAGAACCTTGATCAGCAATTAAAAACATTAAACGGCTTACAGGAACAGCGTGATGCC
ATTATTGAACGCATGAAGTTGATCCAAGGTTTGCAGAGTCAACGTCCAGTAGTGGTAAGACTTGTTGATGAGTTAGTTCG
AGTCACACCACCAGCTATGTATTTAACGAAATTTAGCCGAACCGGAGATAAGTTTACGATTGAAGGTAAAGCTGAGAGTC
CAAATACAGTAGCCGAACTACTCCGTAATCTTGAAGCATCTCCTTGGTATCGTAATGCTTTTATGAACTCTTTCTTGGCT
AATGAAGAGAAAAAAGATAAGGCTGCAAGTTCTCTTCTTCCTAGGGTGGAAGACCACTATGGTAGTTTTGTTGTGACTGT
CGATTTGGGGGAAATGGGCGTGACCACAACGGATGATTCTGCTAAGCCATCTACAGGTGAAAGTGTGGGGGCTGCTAAAT
GA

Domains

Predicted by InterproScan.

Fimbrial assembly protein (PilN) (PilN)

(100-167)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A009T8N7

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilN Acinetobacter baumannii D1279779

99.531

100

0.995
  comN Acinetobacter baylyi ADP1

71.429

98.592

0.704