Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilP   Type   Machinery gene
Locus tag   RKQ54_RS18025 Genome accession   NZ_CP134589
Coordinates   3690123..3690650 (-) Length   175 a.a.
NCBI ID   WP_000695065.1    Uniprot ID   N9K1N5
Organism   Acinetobacter baumannii strain XH1024     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3685123..3695650
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RKQ54_RS18005 (RKQ54_18015) - 3685312..3686187 (-) 876 WP_000218801.1 hypothetical protein -
  RKQ54_RS18010 (RKQ54_18020) aroB 3686203..3687285 (-) 1083 WP_001193997.1 3-dehydroquinate synthase -
  RKQ54_RS18015 (RKQ54_18025) aroK 3687314..3687883 (-) 570 WP_000643712.1 shikimate kinase AroK -
  RKQ54_RS18020 (RKQ54_18030) pilQ 3687895..3690060 (-) 2166 WP_002062175.1 type IV pilus secretin PilQ family protein Machinery gene
  RKQ54_RS18025 (RKQ54_18035) pilP 3690123..3690650 (-) 528 WP_000695065.1 pilus assembly protein PilP Machinery gene
  RKQ54_RS18030 (RKQ54_18040) pilO 3690661..3691401 (-) 741 WP_000081156.1 type 4a pilus biogenesis protein PilO Machinery gene
  RKQ54_RS18035 (RKQ54_18045) pilN 3691398..3692039 (-) 642 WP_000201224.1 PilN domain-containing protein Machinery gene
  RKQ54_RS18040 (RKQ54_18050) pilM 3692039..3693097 (-) 1059 WP_002014066.1 pilus assembly protein PilM Machinery gene

Sequence

Protein


Download         Length: 175 a.a.        Molecular weight: 19419.64 Da        Isoelectric Point: 8.9898

>NTDB_id=881952 RKQ54_RS18025 WP_000695065.1 3690123..3690650(-) (pilP) [Acinetobacter baumannii strain XH1024]
MKIKQITLYVLACAVLVGCDSRIDAVNQEMANIRNQPPLPIEPAPIFTPVPQFNYAAHQLKSPFMPSSLAAELKIMAGKR
VYPNFSRAPQPLESYALEALNMKGSMRNNRGQILALIQTPDQQIERVQVGNYMGMNQGRITHISPTQIDLVEIVPDGREG
YVERPRTLVLIGPAP

Nucleotide


Download         Length: 528 bp        

>NTDB_id=881952 RKQ54_RS18025 WP_000695065.1 3690123..3690650(-) (pilP) [Acinetobacter baumannii strain XH1024]
ATGAAAATTAAGCAAATTACTCTTTATGTTTTGGCGTGTGCTGTGCTTGTCGGTTGTGATTCAAGAATTGATGCAGTAAA
TCAGGAAATGGCCAATATTCGTAATCAGCCGCCACTCCCTATTGAACCAGCACCGATTTTTACTCCTGTACCACAATTTA
ATTACGCTGCTCATCAATTAAAAAGCCCATTTATGCCAAGTTCTCTAGCTGCCGAGCTCAAGATTATGGCGGGGAAACGG
GTTTATCCGAATTTCTCACGTGCGCCGCAACCACTAGAAAGTTATGCACTTGAAGCTTTAAATATGAAAGGGAGCATGCG
TAATAATCGAGGGCAGATATTGGCCCTAATCCAAACACCGGATCAGCAGATTGAACGGGTACAAGTGGGTAACTATATGG
GTATGAATCAGGGCCGTATTACCCATATTAGTCCAACCCAGATTGATCTGGTTGAAATCGTACCTGATGGTCGAGAAGGC
TATGTCGAAAGACCAAGAACCTTGGTCTTGATTGGGCCTGCACCCTAA

Domains

Predicted by InterproScan.

Pilus assembly protein, PilP (PilP)

(27-170)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB N9K1N5

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilP Acinetobacter baumannii D1279779

100

100

1
  comL Acinetobacter baylyi ADP1

71.839

99.429

0.714