Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   RKQ55_RS01045 Genome accession   NZ_CP134586
Coordinates   230843..231424 (+) Length   193 a.a.
NCBI ID   WP_289338309.1    Uniprot ID   -
Organism   Acinetobacter baumannii strain XH1026     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 225843..236424
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RKQ55_RS01020 (RKQ55_01025) - 226464..226817 (+) 354 WP_270900914.1 DUF1304 domain-containing protein -
  RKQ55_RS01025 (RKQ55_01030) - 226870..227211 (+) 342 WP_000263330.1 GlpM family protein -
  RKQ55_RS01030 (RKQ55_01035) tenA 227261..227935 (-) 675 WP_270900915.1 thiaminase II -
  RKQ55_RS01035 (RKQ55_01040) - 228198..229280 (+) 1083 WP_270900916.1 DUF475 domain-containing protein -
  RKQ55_RS01040 (RKQ55_01045) - 229427..230791 (+) 1365 WP_000980460.1 MFS transporter -
  RKQ55_RS01045 (RKQ55_01050) ssb 230843..231424 (+) 582 WP_289338309.1 single-stranded DNA-binding protein Machinery gene
  RKQ55_RS01050 (RKQ55_01055) - 231465..231788 (-) 324 WP_270900763.1 AzlD domain-containing protein -
  RKQ55_RS01055 (RKQ55_01060) - 231785..232480 (-) 696 WP_000431603.1 AzlC family ABC transporter permease -
  RKQ55_RS01060 (RKQ55_01065) - 232549..233097 (+) 549 WP_000081859.1 helix-turn-helix domain-containing protein -
  RKQ55_RS01065 (RKQ55_01070) - 233403..234845 (+) 1443 WP_000718865.1 amino acid permease -
  RKQ55_RS01070 (RKQ55_01075) - 234906..236405 (-) 1500 WP_001257160.1 PLP-dependent aminotransferase family protein -

Sequence

Protein


Download         Length: 193 a.a.        Molecular weight: 20994.84 Da        Isoelectric Point: 6.4822

>NTDB_id=881861 RKQ55_RS01045 WP_289338309.1 230843..231424(+) (ssb) [Acinetobacter baumannii strain XH1026]
MRGVNKVILVGTLGRDPETKTFPNGGSLTQFSIATSEVWTDKNTGERKEQTEWHRIVLHNRLGEIAQQFLRKGSKVYIEG
SLRTRQWTDQNGQERYTTEIRGDQMQMLDARQQGEQGFAGGNDFNQLRFNAPQQGGGYQNNNQGGGYGQNNGGYGGQGGF
GNGGNSPQGGGFAPKAPQQPASAPADLDDDLPF

Nucleotide


Download         Length: 582 bp        

>NTDB_id=881861 RKQ55_RS01045 WP_289338309.1 230843..231424(+) (ssb) [Acinetobacter baumannii strain XH1026]
ATGCGTGGTGTAAATAAGGTTATTTTGGTTGGTACTTTGGGTCGTGATCCTGAAACAAAAACTTTTCCAAATGGGGGCTC
GTTGACCCAGTTTTCTATCGCAACAAGTGAAGTTTGGACCGATAAAAATACAGGTGAACGTAAAGAACAAACAGAATGGC
ACCGTATTGTTTTGCATAACCGTTTAGGGGAAATTGCTCAGCAGTTTTTACGTAAAGGTTCTAAGGTTTATATCGAAGGT
TCATTACGTACACGTCAGTGGACAGACCAAAATGGTCAAGAACGTTATACTACAGAAATCCGTGGCGACCAGATGCAAAT
GTTAGATGCTCGTCAACAAGGTGAACAAGGTTTTGCTGGCGGTAATGATTTTAACCAACTACGTTTTAACGCGCCTCAAC
AAGGTGGCGGCTATCAAAATAACAACCAAGGTGGTGGCTACGGCCAAAACAATGGTGGTTATGGTGGCCAAGGTGGTTTC
GGTAATGGTGGCAATAGCCCGCAAGGTGGTGGTTTCGCTCCTAAAGCTCCACAACAACCAGCATCTGCACCAGCTGATTT
AGACGACGATTTACCGTTCTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(4-108)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Glaesserella parasuis strain SC1401

51.5

100

0.534
  ssb Vibrio cholerae strain A1552

43.564

100

0.456
  ssb Neisseria meningitidis MC58

38.579

100

0.394
  ssb Neisseria gonorrhoeae MS11

38.579

100

0.394